Hb_012565_040

Information

Type -
Description -
Location Contig12565: 20302-31156
Sequence    

Annotation

kegg
ID tcc:TCM_019383
description Kinase family protein, putative isoform 1
nr
ID XP_012078007.1
description PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
swissprot
ID P0C5E2
description Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=2 SV=2
trembl
ID A0A067KA33
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13013 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable serine threonine-protein kinase at1g18390

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07830: 29577-30374
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012565_040 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
2 Hb_002291_020 0.1596289563 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
3 Hb_002527_050 0.1604060347 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
4 Hb_002170_020 0.1778636285 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]
5 Hb_004657_060 0.1850736975 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
6 Hb_000181_210 0.190638587 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
7 Hb_000059_300 0.2100238287 - - caspase, putative [Ricinus communis]
8 Hb_000811_010 0.2125822751 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF118 [Jatropha curcas]
9 Hb_003216_070 0.2162452109 - - hypothetical protein RCOM_0483300 [Ricinus communis]
10 Hb_152868_030 0.216766771 - - abhydrolase domain containing, putative [Ricinus communis]
11 Hb_001123_010 0.2201394544 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000853_060 0.2211889159 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
13 Hb_074506_010 0.2225133074 - - JHL25H03.10 [Jatropha curcas]
14 Hb_006594_060 0.2236689909 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
15 Hb_042509_020 0.2236740528 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
16 Hb_023827_020 0.2238238472 - - beta-1,3-glucanase 1 [Ziziphus jujuba]
17 Hb_000339_020 0.2247082808 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
18 Hb_028872_150 0.2252816406 - - PREDICTED: uncharacterized protein LOC105137493 [Populus euphratica]
19 Hb_002026_080 0.230716676 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
20 Hb_009193_100 0.230875861 - - hypothetical protein JCGZ_15709 [Jatropha curcas]

Gene co-expression network

sample Hb_012565_040 Hb_012565_040 Hb_002291_020 Hb_002291_020 Hb_012565_040--Hb_002291_020 Hb_002527_050 Hb_002527_050 Hb_012565_040--Hb_002527_050 Hb_002170_020 Hb_002170_020 Hb_012565_040--Hb_002170_020 Hb_004657_060 Hb_004657_060 Hb_012565_040--Hb_004657_060 Hb_000181_210 Hb_000181_210 Hb_012565_040--Hb_000181_210 Hb_000059_300 Hb_000059_300 Hb_012565_040--Hb_000059_300 Hb_000649_180 Hb_000649_180 Hb_002291_020--Hb_000649_180 Hb_007919_040 Hb_007919_040 Hb_002291_020--Hb_007919_040 Hb_000141_010 Hb_000141_010 Hb_002291_020--Hb_000141_010 Hb_149515_010 Hb_149515_010 Hb_002291_020--Hb_149515_010 Hb_000527_070 Hb_000527_070 Hb_002291_020--Hb_000527_070 Hb_002527_050--Hb_000649_180 Hb_000011_420 Hb_000011_420 Hb_002527_050--Hb_000011_420 Hb_002527_050--Hb_002170_020 Hb_002527_050--Hb_002291_020 Hb_009193_100 Hb_009193_100 Hb_002527_050--Hb_009193_100 Hb_009535_030 Hb_009535_030 Hb_002170_020--Hb_009535_030 Hb_005016_010 Hb_005016_010 Hb_002170_020--Hb_005016_010 Hb_000683_050 Hb_000683_050 Hb_002170_020--Hb_000683_050 Hb_004030_060 Hb_004030_060 Hb_002170_020--Hb_004030_060 Hb_006683_020 Hb_006683_020 Hb_002170_020--Hb_006683_020 Hb_011872_020 Hb_011872_020 Hb_002170_020--Hb_011872_020 Hb_074506_010 Hb_074506_010 Hb_004657_060--Hb_074506_010 Hb_152868_030 Hb_152868_030 Hb_004657_060--Hb_152868_030 Hb_006700_040 Hb_006700_040 Hb_004657_060--Hb_006700_040 Hb_027760_090 Hb_027760_090 Hb_004657_060--Hb_027760_090 Hb_012760_110 Hb_012760_110 Hb_004657_060--Hb_012760_110 Hb_004657_060--Hb_002291_020 Hb_026549_050 Hb_026549_050 Hb_000181_210--Hb_026549_050 Hb_000832_280 Hb_000832_280 Hb_000181_210--Hb_000832_280 Hb_042509_020 Hb_042509_020 Hb_000181_210--Hb_042509_020 Hb_004324_030 Hb_004324_030 Hb_000181_210--Hb_004324_030 Hb_001922_060 Hb_001922_060 Hb_000181_210--Hb_001922_060 Hb_000056_350 Hb_000056_350 Hb_000181_210--Hb_000056_350 Hb_001486_200 Hb_001486_200 Hb_000059_300--Hb_001486_200 Hb_005779_030 Hb_005779_030 Hb_000059_300--Hb_005779_030 Hb_000059_300--Hb_000056_350 Hb_009646_010 Hb_009646_010 Hb_000059_300--Hb_009646_010 Hb_001341_200 Hb_001341_200 Hb_000059_300--Hb_001341_200 Hb_000059_300--Hb_000181_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0210157 2.11024 0.281734 2.51076 0 0.0419206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.351325 0.687016 1.11052 3.41108 1.77786

CAGE analysis