Hb_012565_050

Information

Type -
Description -
Location Contig12565: 32523-32993
Sequence    

Annotation

kegg
ID rcu:RCOM_1729140
description hypothetical protein
nr
ID XP_012078008.1
description PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KD78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13014 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07831: 32248-32440 , PASA_asmbl_07832: 32768-33131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012565_050 0.0 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
2 Hb_004976_010 0.0409038379 - - hypothetical protein RCOM_1429110 [Ricinus communis]
3 Hb_000340_030 0.0662414941 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
4 Hb_000809_160 0.0709590981 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
5 Hb_002542_130 0.0713749142 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
6 Hb_002701_150 0.0716733894 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
7 Hb_004032_230 0.0734187108 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
8 Hb_000836_410 0.0735248444 - - sec10, putative [Ricinus communis]
9 Hb_140049_040 0.073820243 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
10 Hb_001636_050 0.0741049436 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
11 Hb_000102_050 0.0742005201 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
12 Hb_000094_090 0.07572754 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
13 Hb_031641_010 0.0771864667 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001534_210 0.0776741452 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
15 Hb_003927_040 0.0777017435 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
16 Hb_000645_170 0.0779018023 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001430_080 0.0784512115 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
18 Hb_154580_010 0.0785870785 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
19 Hb_007426_060 0.07871979 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
20 Hb_001231_090 0.0788649359 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012565_050 Hb_012565_050 Hb_004976_010 Hb_004976_010 Hb_012565_050--Hb_004976_010 Hb_000340_030 Hb_000340_030 Hb_012565_050--Hb_000340_030 Hb_000809_160 Hb_000809_160 Hb_012565_050--Hb_000809_160 Hb_002542_130 Hb_002542_130 Hb_012565_050--Hb_002542_130 Hb_002701_150 Hb_002701_150 Hb_012565_050--Hb_002701_150 Hb_004032_230 Hb_004032_230 Hb_012565_050--Hb_004032_230 Hb_055235_020 Hb_055235_020 Hb_004976_010--Hb_055235_020 Hb_001430_080 Hb_001430_080 Hb_004976_010--Hb_001430_080 Hb_007044_110 Hb_007044_110 Hb_004976_010--Hb_007044_110 Hb_001673_050 Hb_001673_050 Hb_004976_010--Hb_001673_050 Hb_001636_050 Hb_001636_050 Hb_004976_010--Hb_001636_050 Hb_001723_010 Hb_001723_010 Hb_000340_030--Hb_001723_010 Hb_000139_320 Hb_000139_320 Hb_000340_030--Hb_000139_320 Hb_031641_010 Hb_031641_010 Hb_000340_030--Hb_031641_010 Hb_002849_170 Hb_002849_170 Hb_000340_030--Hb_002849_170 Hb_003711_010 Hb_003711_010 Hb_000340_030--Hb_003711_010 Hb_000529_060 Hb_000529_060 Hb_000340_030--Hb_000529_060 Hb_000094_090 Hb_000094_090 Hb_000809_160--Hb_000094_090 Hb_002477_250 Hb_002477_250 Hb_000809_160--Hb_002477_250 Hb_000809_160--Hb_031641_010 Hb_000866_450 Hb_000866_450 Hb_000809_160--Hb_000866_450 Hb_000120_910 Hb_000120_910 Hb_000809_160--Hb_000120_910 Hb_000363_120 Hb_000363_120 Hb_000809_160--Hb_000363_120 Hb_001231_090 Hb_001231_090 Hb_002542_130--Hb_001231_090 Hb_001545_150 Hb_001545_150 Hb_002542_130--Hb_001545_150 Hb_001277_300 Hb_001277_300 Hb_002542_130--Hb_001277_300 Hb_005188_040 Hb_005188_040 Hb_002542_130--Hb_005188_040 Hb_004410_070 Hb_004410_070 Hb_002542_130--Hb_004410_070 Hb_002282_060 Hb_002282_060 Hb_002542_130--Hb_002282_060 Hb_000236_470 Hb_000236_470 Hb_002701_150--Hb_000236_470 Hb_000836_410 Hb_000836_410 Hb_002701_150--Hb_000836_410 Hb_002701_150--Hb_001636_050 Hb_000679_340 Hb_000679_340 Hb_002701_150--Hb_000679_340 Hb_000230_090 Hb_000230_090 Hb_002701_150--Hb_000230_090 Hb_001534_210 Hb_001534_210 Hb_004032_230--Hb_001534_210 Hb_000264_070 Hb_000264_070 Hb_004032_230--Hb_000264_070 Hb_102438_030 Hb_102438_030 Hb_004032_230--Hb_102438_030 Hb_000102_050 Hb_000102_050 Hb_004032_230--Hb_000102_050 Hb_004032_230--Hb_001231_090 Hb_003849_140 Hb_003849_140 Hb_004032_230--Hb_003849_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.29624 10.3329 8.1149 5.31712 7.19125 5.66056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.66985 5.59265 2.72777 5.70174 5.79887

CAGE analysis