Hb_012573_030

Information

Type -
Description -
Location Contig12573: 15475-19720
Sequence    

Annotation

kegg
ID rcu:RCOM_0221850
description hypothetical protein
nr
ID XP_002524468.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SEP9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0221850 PE=4 SV=1
Gene Ontology
ID GO:0006661
description transmembrane protein 128

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07861: 15745-16636 , PASA_asmbl_07862: 17519-17799 , PASA_asmbl_07863: 15602-19743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012573_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_171554_080 0.071682421 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
3 Hb_009265_060 0.0841680472 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
4 Hb_054865_130 0.0870918876 - - acyltransferase, putative [Ricinus communis]
5 Hb_001006_180 0.1063037608 - - PREDICTED: endonuclease V-like [Jatropha curcas]
6 Hb_004048_050 0.1099109034 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
7 Hb_024714_060 0.1116353917 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
8 Hb_007429_030 0.1167554379 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
9 Hb_001762_060 0.1234084615 - - pantothenate kinase, putative [Ricinus communis]
10 Hb_005463_020 0.1267013154 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
11 Hb_002290_040 0.1279904428 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012522_030 0.129240712 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_003504_020 0.129985343 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
14 Hb_012423_050 0.1307630244 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
15 Hb_002936_050 0.1318932247 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
16 Hb_000032_040 0.1341045928 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
17 Hb_000419_040 0.1343246561 - - chorismate synthase [Hevea brasiliensis]
18 Hb_010589_040 0.1365834372 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001863_480 0.1371921013 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
20 Hb_003943_030 0.1381958539 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_012573_030 Hb_012573_030 Hb_171554_080 Hb_171554_080 Hb_012573_030--Hb_171554_080 Hb_009265_060 Hb_009265_060 Hb_012573_030--Hb_009265_060 Hb_054865_130 Hb_054865_130 Hb_012573_030--Hb_054865_130 Hb_001006_180 Hb_001006_180 Hb_012573_030--Hb_001006_180 Hb_004048_050 Hb_004048_050 Hb_012573_030--Hb_004048_050 Hb_024714_060 Hb_024714_060 Hb_012573_030--Hb_024714_060 Hb_001863_480 Hb_001863_480 Hb_171554_080--Hb_001863_480 Hb_171554_080--Hb_054865_130 Hb_171554_080--Hb_009265_060 Hb_012522_030 Hb_012522_030 Hb_171554_080--Hb_012522_030 Hb_000419_040 Hb_000419_040 Hb_171554_080--Hb_000419_040 Hb_009265_060--Hb_024714_060 Hb_009265_060--Hb_004048_050 Hb_009265_060--Hb_000419_040 Hb_009265_060--Hb_001006_180 Hb_054865_130--Hb_009265_060 Hb_005463_020 Hb_005463_020 Hb_054865_130--Hb_005463_020 Hb_054865_130--Hb_004048_050 Hb_003020_310 Hb_003020_310 Hb_054865_130--Hb_003020_310 Hb_001762_060 Hb_001762_060 Hb_001006_180--Hb_001762_060 Hb_001006_180--Hb_024714_060 Hb_012423_050 Hb_012423_050 Hb_001006_180--Hb_012423_050 Hb_006831_030 Hb_006831_030 Hb_001006_180--Hb_006831_030 Hb_000398_160 Hb_000398_160 Hb_001006_180--Hb_000398_160 Hb_162275_030 Hb_162275_030 Hb_001006_180--Hb_162275_030 Hb_004048_050--Hb_024714_060 Hb_004048_050--Hb_171554_080 Hb_012725_110 Hb_012725_110 Hb_004048_050--Hb_012725_110 Hb_000012_130 Hb_000012_130 Hb_024714_060--Hb_000012_130 Hb_024714_060--Hb_001762_060 Hb_007594_120 Hb_007594_120 Hb_024714_060--Hb_007594_120 Hb_024714_060--Hb_006831_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.2833 4.2581 2.3081 6.97988 7.61474 16.0254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.8668 34.0649 67.3796 6.56621 6.06521

CAGE analysis