Hb_012573_040

Information

Type -
Description -
Location Contig12573: 21943-27797
Sequence    

Annotation

kegg
ID cic:CICLE_v10008382mg
description hypothetical protein
nr
ID XP_012078756.1
description PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
swissprot
ID Q93W93
description F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1
trembl
ID A0A067K8F2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13307 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07865: 20772-21267 , PASA_asmbl_07866: 24354-27680 , PASA_asmbl_07867: 24023-27795
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012573_040 0.0 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
2 Hb_000398_100 0.0826572406 - - Uncharacterized protein isoform 2 [Theobroma cacao]
3 Hb_000173_470 0.0978467118 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
4 Hb_000951_130 0.0995540062 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
5 Hb_001825_060 0.1001900372 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
6 Hb_000270_120 0.1034279543 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
7 Hb_004916_010 0.1117219874 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
8 Hb_000490_060 0.1147723948 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
9 Hb_000152_330 0.1160213557 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
10 Hb_005725_210 0.1171528865 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
11 Hb_022256_020 0.1181978614 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
12 Hb_002675_130 0.1196609709 - - PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Jatropha curcas]
13 Hb_000465_300 0.1197784388 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
14 Hb_000753_230 0.1203426885 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
15 Hb_141990_040 0.1205716924 - - Protein SCAR2, putative [Ricinus communis]
16 Hb_001405_070 0.1211706061 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
17 Hb_001635_190 0.121561516 - - RNA m5u methyltransferase, putative [Ricinus communis]
18 Hb_003657_010 0.1215772981 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000442_010 0.1217604141 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
20 Hb_002157_080 0.1218999601 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_012573_040 Hb_012573_040 Hb_000398_100 Hb_000398_100 Hb_012573_040--Hb_000398_100 Hb_000173_470 Hb_000173_470 Hb_012573_040--Hb_000173_470 Hb_000951_130 Hb_000951_130 Hb_012573_040--Hb_000951_130 Hb_001825_060 Hb_001825_060 Hb_012573_040--Hb_001825_060 Hb_000270_120 Hb_000270_120 Hb_012573_040--Hb_000270_120 Hb_004916_010 Hb_004916_010 Hb_012573_040--Hb_004916_010 Hb_000029_060 Hb_000029_060 Hb_000398_100--Hb_000029_060 Hb_000086_420 Hb_000086_420 Hb_000398_100--Hb_000086_420 Hb_000327_140 Hb_000327_140 Hb_000398_100--Hb_000327_140 Hb_012239_020 Hb_012239_020 Hb_000398_100--Hb_012239_020 Hb_000398_100--Hb_004916_010 Hb_000465_300 Hb_000465_300 Hb_000173_470--Hb_000465_300 Hb_003607_130 Hb_003607_130 Hb_000173_470--Hb_003607_130 Hb_000753_230 Hb_000753_230 Hb_000173_470--Hb_000753_230 Hb_000749_050 Hb_000749_050 Hb_000173_470--Hb_000749_050 Hb_023771_010 Hb_023771_010 Hb_000173_470--Hb_023771_010 Hb_000890_150 Hb_000890_150 Hb_000173_470--Hb_000890_150 Hb_000656_390 Hb_000656_390 Hb_000951_130--Hb_000656_390 Hb_001723_100 Hb_001723_100 Hb_000951_130--Hb_001723_100 Hb_020178_040 Hb_020178_040 Hb_000951_130--Hb_020178_040 Hb_000951_130--Hb_000173_470 Hb_000347_400 Hb_000347_400 Hb_000951_130--Hb_000347_400 Hb_002272_030 Hb_002272_030 Hb_000951_130--Hb_002272_030 Hb_001856_200 Hb_001856_200 Hb_001825_060--Hb_001856_200 Hb_002217_020 Hb_002217_020 Hb_001825_060--Hb_002217_020 Hb_012107_060 Hb_012107_060 Hb_001825_060--Hb_012107_060 Hb_141990_040 Hb_141990_040 Hb_001825_060--Hb_141990_040 Hb_000465_230 Hb_000465_230 Hb_001825_060--Hb_000465_230 Hb_001541_070 Hb_001541_070 Hb_000270_120--Hb_001541_070 Hb_000152_330 Hb_000152_330 Hb_000270_120--Hb_000152_330 Hb_000270_120--Hb_001723_100 Hb_000086_630 Hb_000086_630 Hb_000270_120--Hb_000086_630 Hb_000270_120--Hb_000656_390 Hb_002542_110 Hb_002542_110 Hb_000270_120--Hb_002542_110 Hb_002818_030 Hb_002818_030 Hb_004916_010--Hb_002818_030 Hb_003849_110 Hb_003849_110 Hb_004916_010--Hb_003849_110 Hb_004916_010--Hb_000029_060 Hb_002234_090 Hb_002234_090 Hb_004916_010--Hb_002234_090 Hb_000015_170 Hb_000015_170 Hb_004916_010--Hb_000015_170 Hb_001716_020 Hb_001716_020 Hb_004916_010--Hb_001716_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.50109 30.8278 12.4492 11.7828 5.77632 7.02929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.70495 17.9217 21.4232 15.3283 13.5275

CAGE analysis