Hb_012573_070

Information

Type -
Description -
Location Contig12573: 63434-65587
Sequence    

Annotation

kegg
ID rcu:RCOM_0222390
description hypothetical protein
nr
ID XP_002524472.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O22969
description Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1
trembl
ID B9SEQ3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0222390 PE=4 SV=1
Gene Ontology
ID GO:0003676
description alba dna rna-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07871: 63459-65504
cDNA
(Sanger)
(ID:Location)		 013_A01.ab1: 63569-65258 , 015_M09.ab1: 63604-63965 , 019_A12.ab1: 63453-65454

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012573_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000545_150 0.0579153738 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
3 Hb_003528_060 0.059151829 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
4 Hb_002518_050 0.0601947078 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
5 Hb_000926_300 0.0607620467 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
6 Hb_001314_100 0.0648254499 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
7 Hb_003683_110 0.0680456569 - - JHL10I11.3 [Jatropha curcas]
8 Hb_032202_090 0.0716744274 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
9 Hb_001818_020 0.0724445569 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
10 Hb_000029_200 0.0734616033 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
11 Hb_000510_110 0.0740867395 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
12 Hb_001538_120 0.0744297444 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
13 Hb_001638_260 0.074662202 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
14 Hb_000057_070 0.0746971059 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
15 Hb_182305_020 0.0776134092 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
16 Hb_128048_010 0.0781142605 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
17 Hb_000127_180 0.0786695574 - - 40S ribosomal protein S18, putative [Ricinus communis]
18 Hb_003927_140 0.0797056039 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
19 Hb_000000_170 0.0802575298 - - defender against cell death, putative [Ricinus communis]
20 Hb_002864_050 0.0803111107 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]

Gene co-expression network

sample Hb_012573_070 Hb_012573_070 Hb_000545_150 Hb_000545_150 Hb_012573_070--Hb_000545_150 Hb_003528_060 Hb_003528_060 Hb_012573_070--Hb_003528_060 Hb_002518_050 Hb_002518_050 Hb_012573_070--Hb_002518_050 Hb_000926_300 Hb_000926_300 Hb_012573_070--Hb_000926_300 Hb_001314_100 Hb_001314_100 Hb_012573_070--Hb_001314_100 Hb_003683_110 Hb_003683_110 Hb_012573_070--Hb_003683_110 Hb_001818_020 Hb_001818_020 Hb_000545_150--Hb_001818_020 Hb_000465_060 Hb_000465_060 Hb_000545_150--Hb_000465_060 Hb_000317_340 Hb_000317_340 Hb_000545_150--Hb_000317_340 Hb_032202_090 Hb_032202_090 Hb_000545_150--Hb_032202_090 Hb_001638_260 Hb_001638_260 Hb_000545_150--Hb_001638_260 Hb_001538_120 Hb_001538_120 Hb_003528_060--Hb_001538_120 Hb_003927_140 Hb_003927_140 Hb_003528_060--Hb_003927_140 Hb_013405_090 Hb_013405_090 Hb_003528_060--Hb_013405_090 Hb_182305_020 Hb_182305_020 Hb_003528_060--Hb_182305_020 Hb_003528_060--Hb_001818_020 Hb_000510_110 Hb_000510_110 Hb_002518_050--Hb_000510_110 Hb_003018_120 Hb_003018_120 Hb_002518_050--Hb_003018_120 Hb_165132_010 Hb_165132_010 Hb_002518_050--Hb_165132_010 Hb_000970_010 Hb_000970_010 Hb_002518_050--Hb_000970_010 Hb_002518_050--Hb_001818_020 Hb_000007_100 Hb_000007_100 Hb_000926_300--Hb_000007_100 Hb_128048_010 Hb_128048_010 Hb_000926_300--Hb_128048_010 Hb_003599_040 Hb_003599_040 Hb_000926_300--Hb_003599_040 Hb_002284_240 Hb_002284_240 Hb_000926_300--Hb_002284_240 Hb_000307_090 Hb_000307_090 Hb_000926_300--Hb_000307_090 Hb_001369_640 Hb_001369_640 Hb_001314_100--Hb_001369_640 Hb_168054_010 Hb_168054_010 Hb_001314_100--Hb_168054_010 Hb_001314_100--Hb_165132_010 Hb_000029_200 Hb_000029_200 Hb_001314_100--Hb_000029_200 Hb_134949_020 Hb_134949_020 Hb_001314_100--Hb_134949_020 Hb_002768_030 Hb_002768_030 Hb_003683_110--Hb_002768_030 Hb_001780_040 Hb_001780_040 Hb_003683_110--Hb_001780_040 Hb_000453_090 Hb_000453_090 Hb_003683_110--Hb_000453_090 Hb_003226_100 Hb_003226_100 Hb_003683_110--Hb_003226_100 Hb_007416_030 Hb_007416_030 Hb_003683_110--Hb_007416_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.7832 23.5957 48.1106 38.0218 57.5286 82.9845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
108.24 189.077 58.641 35.2244 24.5985

CAGE analysis