Hb_012627_020

Information

Type -
Description -
Location Contig12627: 2335-6295
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13870g
description POPTRDRAFT_769685; PHYTOCHROME AND FLOWERING TIME 1 family protein
nr
ID XP_002315956.1
description PHYTOCHROME AND FLOWERING TIME 1 family protein [Populus trichocarpa]
swissprot
ID Q7XYY2
description Mediator of RNA polymerase II transcription subunit 25 OS=Arabidopsis thaliana GN=MED25 PE=1 SV=1
trembl
ID B9HWL3
description PHYTOCHROME AND FLOWERING TIME 1 family protein OS=Populus trichocarpa GN=POPTR_0010s13870g PE=4 SV=1
Gene Ontology
ID GO:0009639
description phytochrome and flowering time 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012627_020 0.0 - - PHYTOCHROME AND FLOWERING TIME 1 family protein [Populus trichocarpa]
2 Hb_000656_090 0.1210449451 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
3 Hb_000160_160 0.1274099168 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
4 Hb_004333_050 0.1482057982 - - -
5 Hb_127552_060 0.1502976511 transcription factor TF Family: SWI/SNF-BAF60b protein binding protein, putative [Ricinus communis]
6 Hb_008447_040 0.150552418 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
7 Hb_008447_030 0.1535784491 - - -
8 Hb_026745_020 0.1548325629 - - PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic [Jatropha curcas]
9 Hb_000684_440 0.1580674451 - - hypothetical protein CICLE_v100111082mg, partial [Citrus clementina]
10 Hb_001010_070 0.161050237 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
11 Hb_004303_040 0.1623465479 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
12 Hb_004448_090 0.1642401147 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
13 Hb_000329_560 0.1662465049 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003030_030 0.1734541513 - - -
15 Hb_004060_030 0.1800313327 - - PREDICTED: primase homolog protein [Jatropha curcas]
16 Hb_001221_340 0.1887440989 - - hypothetical protein EUGRSUZ_B00102 [Eucalyptus grandis]
17 Hb_163975_010 0.1896890343 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
18 Hb_164096_010 0.1909041147 - - hypothetical protein L484_021244 [Morus notabilis]
19 Hb_006274_040 0.1925456523 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
20 Hb_000346_040 0.1987471537 - - -

Gene co-expression network

sample Hb_012627_020 Hb_012627_020 Hb_000656_090 Hb_000656_090 Hb_012627_020--Hb_000656_090 Hb_000160_160 Hb_000160_160 Hb_012627_020--Hb_000160_160 Hb_004333_050 Hb_004333_050 Hb_012627_020--Hb_004333_050 Hb_127552_060 Hb_127552_060 Hb_012627_020--Hb_127552_060 Hb_008447_040 Hb_008447_040 Hb_012627_020--Hb_008447_040 Hb_008447_030 Hb_008447_030 Hb_012627_020--Hb_008447_030 Hb_000656_090--Hb_008447_030 Hb_000656_090--Hb_000160_160 Hb_003030_030 Hb_003030_030 Hb_000656_090--Hb_003030_030 Hb_000656_090--Hb_008447_040 Hb_026745_020 Hb_026745_020 Hb_000656_090--Hb_026745_020 Hb_002200_050 Hb_002200_050 Hb_000160_160--Hb_002200_050 Hb_000160_160--Hb_008447_030 Hb_000329_560 Hb_000329_560 Hb_000160_160--Hb_000329_560 Hb_025190_010 Hb_025190_010 Hb_000160_160--Hb_025190_010 Hb_004224_020 Hb_004224_020 Hb_004333_050--Hb_004224_020 Hb_004333_050--Hb_026745_020 Hb_028912_040 Hb_028912_040 Hb_004333_050--Hb_028912_040 Hb_004333_050--Hb_127552_060 Hb_012194_050 Hb_012194_050 Hb_004333_050--Hb_012194_050 Hb_127552_060--Hb_008447_040 Hb_127552_060--Hb_028912_040 Hb_004448_090 Hb_004448_090 Hb_127552_060--Hb_004448_090 Hb_187953_010 Hb_187953_010 Hb_127552_060--Hb_187953_010 Hb_000236_310 Hb_000236_310 Hb_127552_060--Hb_000236_310 Hb_000159_100 Hb_000159_100 Hb_127552_060--Hb_000159_100 Hb_008447_040--Hb_004448_090 Hb_007023_030 Hb_007023_030 Hb_008447_040--Hb_007023_030 Hb_000429_150 Hb_000429_150 Hb_008447_040--Hb_000429_150 Hb_008447_040--Hb_000236_310 Hb_002414_060 Hb_002414_060 Hb_008447_040--Hb_002414_060 Hb_008447_030--Hb_026745_020 Hb_006274_040 Hb_006274_040 Hb_008447_030--Hb_006274_040 Hb_002200_040 Hb_002200_040 Hb_008447_030--Hb_002200_040 Hb_008447_030--Hb_008447_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.247657 0.179883 0.252058 1.15374 0.432694 3.16861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.757108 0.89261 1.04731 1.49098 1.88413

CAGE analysis