Hb_012627_050

Information

Type transcription factor
Description TF Family: G2-like
Location Contig12627: 26996-29172
Sequence    

Annotation

kegg
ID rcu:RCOM_0353920
description DNA binding protein, putative
nr
ID XP_002529155.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9LTH4
description Transcription factor BOA OS=Arabidopsis thaliana GN=BOA PE=2 SV=1
trembl
ID B9ST36
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0353920 PE=4 SV=1
Gene Ontology
ID GO:0003677
description probable transcription factor glk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07959: 27138-29147 , PASA_asmbl_07960: 29157-29250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012627_050 0.0 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
2 Hb_010661_030 0.0754436176 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
3 Hb_003069_010 0.0758344851 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
4 Hb_001934_030 0.0778108848 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
5 Hb_007576_040 0.0797094169 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
6 Hb_009421_020 0.085341168 - - PREDICTED: caltractin-like [Jatropha curcas]
7 Hb_000392_440 0.0857996369 - - PREDICTED: nuclear ribonuclease Z isoform X1 [Jatropha curcas]
8 Hb_007951_060 0.0858061957 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
9 Hb_003020_010 0.0869918734 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
10 Hb_001439_150 0.0889617646 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
11 Hb_001404_100 0.0918381689 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
12 Hb_005503_030 0.0923810333 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
13 Hb_000926_280 0.093992806 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
14 Hb_001512_060 0.0965260886 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
15 Hb_000046_300 0.0966105779 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
16 Hb_001305_010 0.097747985 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
17 Hb_007477_070 0.0980258775 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
18 Hb_005186_050 0.0983290552 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
19 Hb_000771_120 0.0988613498 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
20 Hb_007154_020 0.099293359 - - -

Gene co-expression network

sample Hb_012627_050 Hb_012627_050 Hb_010661_030 Hb_010661_030 Hb_012627_050--Hb_010661_030 Hb_003069_010 Hb_003069_010 Hb_012627_050--Hb_003069_010 Hb_001934_030 Hb_001934_030 Hb_012627_050--Hb_001934_030 Hb_007576_040 Hb_007576_040 Hb_012627_050--Hb_007576_040 Hb_009421_020 Hb_009421_020 Hb_012627_050--Hb_009421_020 Hb_000392_440 Hb_000392_440 Hb_012627_050--Hb_000392_440 Hb_001635_170 Hb_001635_170 Hb_010661_030--Hb_001635_170 Hb_010661_030--Hb_007576_040 Hb_001404_100 Hb_001404_100 Hb_010661_030--Hb_001404_100 Hb_007154_020 Hb_007154_020 Hb_010661_030--Hb_007154_020 Hb_002233_150 Hb_002233_150 Hb_010661_030--Hb_002233_150 Hb_010661_030--Hb_003069_010 Hb_005186_050 Hb_005186_050 Hb_003069_010--Hb_005186_050 Hb_003607_150 Hb_003607_150 Hb_003069_010--Hb_003607_150 Hb_003069_010--Hb_007154_020 Hb_004531_070 Hb_004531_070 Hb_003069_010--Hb_004531_070 Hb_001934_030--Hb_007154_020 Hb_000853_430 Hb_000853_430 Hb_001934_030--Hb_000853_430 Hb_001005_060 Hb_001005_060 Hb_001934_030--Hb_001005_060 Hb_001934_030--Hb_003069_010 Hb_001934_030--Hb_005186_050 Hb_007951_060 Hb_007951_060 Hb_007576_040--Hb_007951_060 Hb_005503_030 Hb_005503_030 Hb_007576_040--Hb_005503_030 Hb_063716_050 Hb_063716_050 Hb_007576_040--Hb_063716_050 Hb_000327_120 Hb_000327_120 Hb_007576_040--Hb_000327_120 Hb_001512_060 Hb_001512_060 Hb_007576_040--Hb_001512_060 Hb_000365_120 Hb_000365_120 Hb_009421_020--Hb_000365_120 Hb_000866_010 Hb_000866_010 Hb_009421_020--Hb_000866_010 Hb_007632_030 Hb_007632_030 Hb_009421_020--Hb_007632_030 Hb_009421_020--Hb_001512_060 Hb_000362_200 Hb_000362_200 Hb_009421_020--Hb_000362_200 Hb_000329_320 Hb_000329_320 Hb_009421_020--Hb_000329_320 Hb_011360_140 Hb_011360_140 Hb_000392_440--Hb_011360_140 Hb_005993_040 Hb_005993_040 Hb_000392_440--Hb_005993_040 Hb_000392_440--Hb_010661_030 Hb_002928_130 Hb_002928_130 Hb_000392_440--Hb_002928_130 Hb_000015_080 Hb_000015_080 Hb_000392_440--Hb_000015_080 Hb_011571_020 Hb_011571_020 Hb_000392_440--Hb_011571_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.9579 19.3656 54.1414 13.1912 58.813 54.9219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.1454 57.3454 55.2496 27.0903 19.8488

CAGE analysis