Hb_012633_010

Information

Type transcription factor
Description TF Family: WRKY
Location Contig12633: 12830-15058
Sequence    

Annotation

kegg
ID rcu:RCOM_0761820
description WRKY transcription factor, putative
nr
ID XP_012074960.1
description PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]
swissprot
ID Q9FHR7
description Probable WRKY transcription factor 49 OS=Arabidopsis thaliana GN=WRKY49 PE=2 SV=1
trembl
ID S5CS72
description Uncharacterized protein OS=Jatropha curcas GN=WRKY38 PE=4 SV=1
Gene Ontology
ID GO:0003677
description probable wrky transcription factor 49

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07966: 12793-15163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012633_010 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]
2 Hb_002447_060 0.0732886847 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
3 Hb_002079_100 0.0889367599 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
4 Hb_006519_020 0.1028817059 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
5 Hb_001040_050 0.1068863986 - - Stem-specific protein TSJT1, putative [Ricinus communis]
6 Hb_000505_030 0.1142409207 - - conserved hypothetical protein [Ricinus communis]
7 Hb_163140_010 0.1147850802 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
8 Hb_000280_100 0.1192235184 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
9 Hb_003964_050 0.1222621375 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 25-like [Jatropha curcas]
10 Hb_022406_010 0.1263993342 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_028187_010 0.1272141291 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
12 Hb_012084_010 0.1301168945 - - cold regulated protein [Manihot esculenta]
13 Hb_007681_020 0.1315521362 - - transferase, putative [Ricinus communis]
14 Hb_000731_030 0.1331559531 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
15 Hb_005839_080 0.1351177898 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
16 Hb_003935_050 0.1351782809 - - protein with unknown function [Ricinus communis]
17 Hb_001143_200 0.1353773038 transcription factor TF Family: NAC NAC domain protein [Glycine max]
18 Hb_000157_060 0.1354244197 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
19 Hb_001606_040 0.136662987 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
20 Hb_078954_020 0.1371388883 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]

Gene co-expression network

sample Hb_012633_010 Hb_012633_010 Hb_002447_060 Hb_002447_060 Hb_012633_010--Hb_002447_060 Hb_002079_100 Hb_002079_100 Hb_012633_010--Hb_002079_100 Hb_006519_020 Hb_006519_020 Hb_012633_010--Hb_006519_020 Hb_001040_050 Hb_001040_050 Hb_012633_010--Hb_001040_050 Hb_000505_030 Hb_000505_030 Hb_012633_010--Hb_000505_030 Hb_163140_010 Hb_163140_010 Hb_012633_010--Hb_163140_010 Hb_002447_060--Hb_002079_100 Hb_002447_060--Hb_001040_050 Hb_000157_060 Hb_000157_060 Hb_002447_060--Hb_000157_060 Hb_028187_010 Hb_028187_010 Hb_002447_060--Hb_028187_010 Hb_002447_060--Hb_000505_030 Hb_002079_100--Hb_000505_030 Hb_007558_060 Hb_007558_060 Hb_002079_100--Hb_007558_060 Hb_000731_030 Hb_000731_030 Hb_002079_100--Hb_000731_030 Hb_000816_080 Hb_000816_080 Hb_002079_100--Hb_000816_080 Hb_022406_010 Hb_022406_010 Hb_006519_020--Hb_022406_010 Hb_004007_080 Hb_004007_080 Hb_006519_020--Hb_004007_080 Hb_001606_040 Hb_001606_040 Hb_006519_020--Hb_001606_040 Hb_006519_020--Hb_001040_050 Hb_007681_020 Hb_007681_020 Hb_006519_020--Hb_007681_020 Hb_169753_010 Hb_169753_010 Hb_006519_020--Hb_169753_010 Hb_000115_190 Hb_000115_190 Hb_001040_050--Hb_000115_190 Hb_001040_050--Hb_002079_100 Hb_000347_160 Hb_000347_160 Hb_001040_050--Hb_000347_160 Hb_000505_030--Hb_000731_030 Hb_000505_030--Hb_007558_060 Hb_000152_200 Hb_000152_200 Hb_000505_030--Hb_000152_200 Hb_001680_060 Hb_001680_060 Hb_000505_030--Hb_001680_060 Hb_001519_080 Hb_001519_080 Hb_000505_030--Hb_001519_080 Hb_163140_010--Hb_007681_020 Hb_163140_010--Hb_028187_010 Hb_149985_030 Hb_149985_030 Hb_163140_010--Hb_149985_030 Hb_163140_010--Hb_006519_020 Hb_000349_170 Hb_000349_170 Hb_163140_010--Hb_000349_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.372056 5.01929 0.377385 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0415442 0.206707

CAGE analysis