Hb_012634_010

Information

Type -
Description -
Location Contig12634: 16567-20776
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa006591mg
description hypothetical protein
nr
ID XP_011003586.1
description PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
swissprot
ID P0CAT7
description Alpha-ketoglutarate-dependent dioxygenase AlkB homolog OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=alkB PE=3 SV=1
trembl
ID M5WB46
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006591mg PE=4 SV=1
Gene Ontology
ID GO:0016706
description 2-oxoglutarate-dependent dioxygenase family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07982: 16623-20719
cDNA
(Sanger)
(ID:Location)		 039_K11.ab1: 19793-20712

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012634_010 0.0 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
2 Hb_001790_020 0.0597291937 - - PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]
3 Hb_002026_100 0.0668876093 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X2 [Jatropha curcas]
4 Hb_002027_260 0.0674811626 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
5 Hb_001571_040 0.0685879654 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
6 Hb_006400_040 0.0752392728 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
7 Hb_082609_020 0.0774829029 - - conserved hypothetical protein [Ricinus communis]
8 Hb_181235_010 0.0805057041 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
9 Hb_000152_820 0.0806147955 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
10 Hb_003777_330 0.0823578257 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
11 Hb_000923_020 0.0835365293 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
12 Hb_000300_060 0.0840102152 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
13 Hb_001736_040 0.0855488762 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
14 Hb_000224_170 0.0859476018 - - hypothetical protein JCGZ_13777 [Jatropha curcas]
15 Hb_000977_070 0.0869998108 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
16 Hb_002375_020 0.0870717991 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
17 Hb_000321_070 0.0873782354 - - protein with unknown function [Ricinus communis]
18 Hb_000032_290 0.0874336903 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
19 Hb_000155_190 0.0879486677 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005188_050 0.0880978569 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012634_010 Hb_012634_010 Hb_001790_020 Hb_001790_020 Hb_012634_010--Hb_001790_020 Hb_002026_100 Hb_002026_100 Hb_012634_010--Hb_002026_100 Hb_002027_260 Hb_002027_260 Hb_012634_010--Hb_002027_260 Hb_001571_040 Hb_001571_040 Hb_012634_010--Hb_001571_040 Hb_006400_040 Hb_006400_040 Hb_012634_010--Hb_006400_040 Hb_082609_020 Hb_082609_020 Hb_012634_010--Hb_082609_020 Hb_001790_020--Hb_001571_040 Hb_106371_010 Hb_106371_010 Hb_001790_020--Hb_106371_010 Hb_000321_070 Hb_000321_070 Hb_001790_020--Hb_000321_070 Hb_000160_040 Hb_000160_040 Hb_001790_020--Hb_000160_040 Hb_000123_210 Hb_000123_210 Hb_001790_020--Hb_000123_210 Hb_000152_820 Hb_000152_820 Hb_002026_100--Hb_000152_820 Hb_000977_070 Hb_000977_070 Hb_002026_100--Hb_000977_070 Hb_010175_020 Hb_010175_020 Hb_002026_100--Hb_010175_020 Hb_001736_040 Hb_001736_040 Hb_002026_100--Hb_001736_040 Hb_000406_220 Hb_000406_220 Hb_002026_100--Hb_000406_220 Hb_002027_260--Hb_006400_040 Hb_001623_420 Hb_001623_420 Hb_002027_260--Hb_001623_420 Hb_001728_100 Hb_001728_100 Hb_002027_260--Hb_001728_100 Hb_000236_100 Hb_000236_100 Hb_002027_260--Hb_000236_100 Hb_002375_020 Hb_002375_020 Hb_002027_260--Hb_002375_020 Hb_000300_060 Hb_000300_060 Hb_001571_040--Hb_000300_060 Hb_000032_570 Hb_000032_570 Hb_001571_040--Hb_000032_570 Hb_006332_020 Hb_006332_020 Hb_001571_040--Hb_006332_020 Hb_066182_010 Hb_066182_010 Hb_001571_040--Hb_066182_010 Hb_001584_330 Hb_001584_330 Hb_006400_040--Hb_001584_330 Hb_006400_040--Hb_001623_420 Hb_005306_110 Hb_005306_110 Hb_006400_040--Hb_005306_110 Hb_000340_510 Hb_000340_510 Hb_006400_040--Hb_000340_510 Hb_000418_100 Hb_000418_100 Hb_082609_020--Hb_000418_100 Hb_082609_020--Hb_001584_330 Hb_003777_330 Hb_003777_330 Hb_082609_020--Hb_003777_330 Hb_009838_100 Hb_009838_100 Hb_082609_020--Hb_009838_100 Hb_000062_240 Hb_000062_240 Hb_082609_020--Hb_000062_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0978 10.1405 3.3741 5.91872 17.392 14.8653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4509 14.2105 12.7918 10.1234 3.47711

CAGE analysis