Hb_012634_020

Information

Type -
Description -
Location Contig12634: 44893-46376
Sequence    

Annotation

kegg
ID rcu:RCOM_1230910
description sugar binding protein, putative
nr
ID XP_012089720.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
swissprot
ID Q8RWZ5
description G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1
trembl
ID A0A067JFW9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00383 PE=4 SV=1
Gene Ontology
ID GO:0030246
description pan domain-containing protein at5g03700

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07983: 44663-44795 , PASA_asmbl_07984: 44804-46668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012634_020 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
2 Hb_002685_200 0.1150739607 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
3 Hb_000084_240 0.162288127 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
4 Hb_000445_100 0.1646234271 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
5 Hb_002701_210 0.1646428421 - - Protein COBRA precursor, putative [Ricinus communis]
6 Hb_001638_030 0.1664178633 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
7 Hb_003224_030 0.1693731118 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
8 Hb_004635_030 0.1715308029 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
9 Hb_091226_010 0.1729698332 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
10 Hb_027402_040 0.1734241779 - - Thioredoxin II, putative [Ricinus communis]
11 Hb_000179_240 0.1750691552 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
12 Hb_000186_200 0.176329814 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
13 Hb_075230_010 0.1811902994 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max]
14 Hb_005499_010 0.1831065328 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
15 Hb_003078_030 0.1834103747 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
16 Hb_007403_110 0.1835053482 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
17 Hb_003077_050 0.1859911698 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
18 Hb_001377_360 0.1910313139 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
19 Hb_005000_300 0.1921524263 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
20 Hb_015026_040 0.1928148371 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_012634_020 Hb_012634_020 Hb_002685_200 Hb_002685_200 Hb_012634_020--Hb_002685_200 Hb_000084_240 Hb_000084_240 Hb_012634_020--Hb_000084_240 Hb_000445_100 Hb_000445_100 Hb_012634_020--Hb_000445_100 Hb_002701_210 Hb_002701_210 Hb_012634_020--Hb_002701_210 Hb_001638_030 Hb_001638_030 Hb_012634_020--Hb_001638_030 Hb_003224_030 Hb_003224_030 Hb_012634_020--Hb_003224_030 Hb_000179_240 Hb_000179_240 Hb_002685_200--Hb_000179_240 Hb_002685_200--Hb_001638_030 Hb_003077_050 Hb_003077_050 Hb_002685_200--Hb_003077_050 Hb_002685_200--Hb_002701_210 Hb_002685_200--Hb_000084_240 Hb_005499_010 Hb_005499_010 Hb_000084_240--Hb_005499_010 Hb_000186_200 Hb_000186_200 Hb_000084_240--Hb_000186_200 Hb_002897_050 Hb_002897_050 Hb_000084_240--Hb_002897_050 Hb_000045_260 Hb_000045_260 Hb_000084_240--Hb_000045_260 Hb_002107_060 Hb_002107_060 Hb_000084_240--Hb_002107_060 Hb_011631_010 Hb_011631_010 Hb_000084_240--Hb_011631_010 Hb_015026_040 Hb_015026_040 Hb_000445_100--Hb_015026_040 Hb_159809_050 Hb_159809_050 Hb_000445_100--Hb_159809_050 Hb_000421_230 Hb_000421_230 Hb_000445_100--Hb_000421_230 Hb_000749_070 Hb_000749_070 Hb_000445_100--Hb_000749_070 Hb_090782_010 Hb_090782_010 Hb_000445_100--Hb_090782_010 Hb_003581_280 Hb_003581_280 Hb_000445_100--Hb_003581_280 Hb_002701_210--Hb_000186_200 Hb_003078_030 Hb_003078_030 Hb_002701_210--Hb_003078_030 Hb_002701_210--Hb_000084_240 Hb_000163_230 Hb_000163_230 Hb_002701_210--Hb_000163_230 Hb_002701_210--Hb_000045_260 Hb_004108_240 Hb_004108_240 Hb_002701_210--Hb_004108_240 Hb_001235_170 Hb_001235_170 Hb_001638_030--Hb_001235_170 Hb_000925_030 Hb_000925_030 Hb_001638_030--Hb_000925_030 Hb_006538_130 Hb_006538_130 Hb_001638_030--Hb_006538_130 Hb_001376_010 Hb_001376_010 Hb_001638_030--Hb_001376_010 Hb_003147_060 Hb_003147_060 Hb_001638_030--Hb_003147_060 Hb_007007_080 Hb_007007_080 Hb_003224_030--Hb_007007_080 Hb_003224_030--Hb_000084_240 Hb_003224_030--Hb_002701_210 Hb_003224_030--Hb_005499_010 Hb_003224_030--Hb_000186_200 Hb_000069_730 Hb_000069_730 Hb_003224_030--Hb_000069_730
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7548 44.0017 25.0146 11.0548 4.48397 6.6012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.81626 6.14585 7.15822 0.768755 1.33739

CAGE analysis