Hb_012651_010

Information

Type -
Description -
Location Contig12651: 4836-6968
Sequence    

Annotation

kegg
ID tcc:TCM_040152
description Uncharacterized protein isoform 1
nr
ID XP_012086040.1
description PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
swissprot
ID Q9M015
description Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1
trembl
ID A0A067JTM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22853 PE=4 SV=1
Gene Ontology
ID GO:0005773
description PREDICTED: uncharacterized protein LOC105645131

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07989: 4890-6949
cDNA
(Sanger)
(ID:Location)		 012_K24.ab1: 5238-6949

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012651_010 0.0 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
2 Hb_001946_180 0.0804376654 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000002_480 0.0851836222 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
4 Hb_000890_230 0.0893806008 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
5 Hb_000429_050 0.0959168159 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
6 Hb_000140_350 0.0982218336 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000984_310 0.1001794914 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
8 Hb_001051_070 0.1005033054 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
9 Hb_000139_530 0.1008791333 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000049_020 0.1047500149 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
11 Hb_001481_150 0.1056972047 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
12 Hb_000331_370 0.1064941791 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
13 Hb_005977_100 0.1069276947 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
14 Hb_007286_020 0.1075794212 - - hypothetical protein L484_010675 [Morus notabilis]
15 Hb_000477_100 0.1094256213 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
16 Hb_008406_180 0.1095349764 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
17 Hb_003097_070 0.1101612182 - - glucose regulated repressor protein, putative [Ricinus communis]
18 Hb_000146_040 0.1107281114 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
19 Hb_004102_170 0.111320418 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
20 Hb_000359_090 0.111425367 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]

Gene co-expression network

sample Hb_012651_010 Hb_012651_010 Hb_001946_180 Hb_001946_180 Hb_012651_010--Hb_001946_180 Hb_000002_480 Hb_000002_480 Hb_012651_010--Hb_000002_480 Hb_000890_230 Hb_000890_230 Hb_012651_010--Hb_000890_230 Hb_000429_050 Hb_000429_050 Hb_012651_010--Hb_000429_050 Hb_000140_350 Hb_000140_350 Hb_012651_010--Hb_000140_350 Hb_000984_310 Hb_000984_310 Hb_012651_010--Hb_000984_310 Hb_002289_060 Hb_002289_060 Hb_001946_180--Hb_002289_060 Hb_001842_010 Hb_001842_010 Hb_001946_180--Hb_001842_010 Hb_000049_020 Hb_000049_020 Hb_001946_180--Hb_000049_020 Hb_138585_080 Hb_138585_080 Hb_001946_180--Hb_138585_080 Hb_002226_080 Hb_002226_080 Hb_001946_180--Hb_002226_080 Hb_000331_370 Hb_000331_370 Hb_000002_480--Hb_000331_370 Hb_086639_080 Hb_086639_080 Hb_000002_480--Hb_086639_080 Hb_000002_480--Hb_000890_230 Hb_000139_530 Hb_000139_530 Hb_000002_480--Hb_000139_530 Hb_000371_090 Hb_000371_090 Hb_000002_480--Hb_000371_090 Hb_008406_180 Hb_008406_180 Hb_000890_230--Hb_008406_180 Hb_000890_230--Hb_086639_080 Hb_000107_080 Hb_000107_080 Hb_000890_230--Hb_000107_080 Hb_000890_230--Hb_000331_370 Hb_000359_090 Hb_000359_090 Hb_000429_050--Hb_000359_090 Hb_000028_600 Hb_000028_600 Hb_000429_050--Hb_000028_600 Hb_002781_030 Hb_002781_030 Hb_000429_050--Hb_002781_030 Hb_001014_210 Hb_001014_210 Hb_000429_050--Hb_001014_210 Hb_000258_240 Hb_000258_240 Hb_000429_050--Hb_000258_240 Hb_000146_040 Hb_000146_040 Hb_000140_350--Hb_000146_040 Hb_000836_280 Hb_000836_280 Hb_000140_350--Hb_000836_280 Hb_000208_280 Hb_000208_280 Hb_000140_350--Hb_000208_280 Hb_004102_170 Hb_004102_170 Hb_000140_350--Hb_004102_170 Hb_000130_180 Hb_000130_180 Hb_000140_350--Hb_000130_180 Hb_000477_100 Hb_000477_100 Hb_000140_350--Hb_000477_100 Hb_001486_190 Hb_001486_190 Hb_000984_310--Hb_001486_190 Hb_001051_070 Hb_001051_070 Hb_000984_310--Hb_001051_070 Hb_000984_310--Hb_000836_280 Hb_000679_100 Hb_000679_100 Hb_000984_310--Hb_000679_100 Hb_000984_310--Hb_000140_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1299 24.7632 21.3709 81.9862 25.9032 18.5815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.9228 19.2185 22.3998 23.1583 29.5905

CAGE analysis