Hb_012653_040

Information

Type -
Description -
Location Contig12653: 54553-54870
Sequence    

Annotation

kegg
ID rcu:RCOM_1606350
description UV-induced protein uvi31, putative
nr
ID XP_002525482.1
description UV-induced protein uvi31, putative [Ricinus communis]
swissprot
ID Q84W65
description SufE-like protein 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SUFE1 PE=1 SV=2
trembl
ID B9SHL3
description UV-induced protein uvi31, putative OS=Ricinus communis GN=RCOM_1606350 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07994: 54530-61366
cDNA
(Sanger)
(ID:Location)		 014_F17.ab1: 54530-61261

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012653_040 0.0 - - UV-induced protein uvi31, putative [Ricinus communis]
2 Hb_000083_170 0.0796195956 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
3 Hb_180301_010 0.0844361749 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
4 Hb_001504_080 0.088261634 - - golgi snare 11 protein, putative [Ricinus communis]
5 Hb_006198_080 0.0920982042 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
6 Hb_037887_010 0.09213906 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
7 Hb_000162_260 0.0926170479 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1 [Nelumbo nucifera]
8 Hb_000898_050 0.0942876329 - - -
9 Hb_001205_150 0.0948902511 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
10 Hb_003092_030 0.096863367 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
11 Hb_004705_100 0.1004814632 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]
12 Hb_000347_200 0.1033270369 - - lsm1, putative [Ricinus communis]
13 Hb_004306_020 0.1044565956 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
14 Hb_001700_030 0.1060014864 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
15 Hb_000107_310 0.1063951971 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
16 Hb_004336_050 0.1071311856 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
17 Hb_001584_190 0.1072323501 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
18 Hb_003352_040 0.1079937828 - - PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]
19 Hb_031089_040 0.109153893 - - thioredoxin H-type 1 [Hevea brasiliensis]
20 Hb_000692_220 0.1095362159 - - hypothetical protein B456_002G120900 [Gossypium raimondii]

Gene co-expression network

sample Hb_012653_040 Hb_012653_040 Hb_000083_170 Hb_000083_170 Hb_012653_040--Hb_000083_170 Hb_180301_010 Hb_180301_010 Hb_012653_040--Hb_180301_010 Hb_001504_080 Hb_001504_080 Hb_012653_040--Hb_001504_080 Hb_006198_080 Hb_006198_080 Hb_012653_040--Hb_006198_080 Hb_037887_010 Hb_037887_010 Hb_012653_040--Hb_037887_010 Hb_000162_260 Hb_000162_260 Hb_012653_040--Hb_000162_260 Hb_000083_170--Hb_037887_010 Hb_005867_020 Hb_005867_020 Hb_000083_170--Hb_005867_020 Hb_000083_170--Hb_000162_260 Hb_000326_090 Hb_000326_090 Hb_000083_170--Hb_000326_090 Hb_002259_160 Hb_002259_160 Hb_000083_170--Hb_002259_160 Hb_004032_100 Hb_004032_100 Hb_180301_010--Hb_004032_100 Hb_004336_050 Hb_004336_050 Hb_180301_010--Hb_004336_050 Hb_000172_030 Hb_000172_030 Hb_180301_010--Hb_000172_030 Hb_004374_140 Hb_004374_140 Hb_180301_010--Hb_004374_140 Hb_000751_130 Hb_000751_130 Hb_180301_010--Hb_000751_130 Hb_007735_030 Hb_007735_030 Hb_180301_010--Hb_007735_030 Hb_001504_080--Hb_004336_050 Hb_001504_080--Hb_180301_010 Hb_001504_080--Hb_037887_010 Hb_001504_080--Hb_000083_170 Hb_005588_070 Hb_005588_070 Hb_001504_080--Hb_005588_070 Hb_003092_030 Hb_003092_030 Hb_006198_080--Hb_003092_030 Hb_000700_110 Hb_000700_110 Hb_006198_080--Hb_000700_110 Hb_000347_200 Hb_000347_200 Hb_006198_080--Hb_000347_200 Hb_006198_080--Hb_037887_010 Hb_000107_310 Hb_000107_310 Hb_006198_080--Hb_000107_310 Hb_021238_050 Hb_021238_050 Hb_006198_080--Hb_021238_050 Hb_037887_010--Hb_003092_030 Hb_000898_050 Hb_000898_050 Hb_037887_010--Hb_000898_050 Hb_006429_010 Hb_006429_010 Hb_037887_010--Hb_006429_010 Hb_001584_190 Hb_001584_190 Hb_037887_010--Hb_001584_190 Hb_000162_260--Hb_001584_190 Hb_000162_260--Hb_037887_010 Hb_066768_010 Hb_066768_010 Hb_000162_260--Hb_066768_010 Hb_000479_190 Hb_000479_190 Hb_000162_260--Hb_000479_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.3401 10.6856 10.0033 59.4415 20.2085 73.4683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.6507 62.829 57.958 21.7771 16.6968

CAGE analysis