Hb_012653_050

Information

Type -
Description -
Location Contig12653: 82330-83199
Sequence    

Annotation

kegg
ID rcu:RCOM_0460020
description hypothetical protein
nr
ID XP_002528226.1
description hypothetical protein RCOM_0460020 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SQF7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0460020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07995: 81958-82709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012653_050 0.0 - - hypothetical protein RCOM_0460020 [Ricinus communis]
2 Hb_010883_170 0.063552492 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
3 Hb_000816_140 0.0702595123 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
4 Hb_000103_450 0.0772538596 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
5 Hb_000483_450 0.0806143107 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
6 Hb_004202_020 0.0836341631 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000815_050 0.0843848974 - - PREDICTED: expansin-A1 [Populus euphratica]
8 Hb_003376_020 0.0900101572 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000057_090 0.0910936783 - - hypothetical protein RCOM_1494490 [Ricinus communis]
10 Hb_000742_070 0.0926990226 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]
11 Hb_083963_010 0.0936484167 - - PREDICTED: probable carboxylesterase 8 [Jatropha curcas]
12 Hb_001956_130 0.0939866416 - - catalytic, putative [Ricinus communis]
13 Hb_000140_320 0.0943106169 - - delta-8 sphingolipid desaturase [Vernicia fordii]
14 Hb_010407_130 0.0943143786 - - hypothetical protein POPTR_0008s16680g [Populus trichocarpa]
15 Hb_002221_060 0.0946747387 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
16 Hb_004079_070 0.0975246327 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
17 Hb_000933_030 0.0975534419 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
18 Hb_017110_030 0.0983573719 - - PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
19 Hb_001047_090 0.0991121521 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
20 Hb_023582_030 0.1005115633 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_012653_050 Hb_012653_050 Hb_010883_170 Hb_010883_170 Hb_012653_050--Hb_010883_170 Hb_000816_140 Hb_000816_140 Hb_012653_050--Hb_000816_140 Hb_000103_450 Hb_000103_450 Hb_012653_050--Hb_000103_450 Hb_000483_450 Hb_000483_450 Hb_012653_050--Hb_000483_450 Hb_004202_020 Hb_004202_020 Hb_012653_050--Hb_004202_020 Hb_000815_050 Hb_000815_050 Hb_012653_050--Hb_000815_050 Hb_010883_170--Hb_000816_140 Hb_010883_170--Hb_004202_020 Hb_002221_060 Hb_002221_060 Hb_010883_170--Hb_002221_060 Hb_006922_120 Hb_006922_120 Hb_010883_170--Hb_006922_120 Hb_006977_010 Hb_006977_010 Hb_010883_170--Hb_006977_010 Hb_007113_060 Hb_007113_060 Hb_000816_140--Hb_007113_060 Hb_000816_140--Hb_006922_120 Hb_000816_140--Hb_000815_050 Hb_000057_090 Hb_000057_090 Hb_000816_140--Hb_000057_090 Hb_010407_130 Hb_010407_130 Hb_000103_450--Hb_010407_130 Hb_053264_010 Hb_053264_010 Hb_000103_450--Hb_053264_010 Hb_006846_040 Hb_006846_040 Hb_000103_450--Hb_006846_040 Hb_004435_020 Hb_004435_020 Hb_000103_450--Hb_004435_020 Hb_001047_090 Hb_001047_090 Hb_000103_450--Hb_001047_090 Hb_000483_450--Hb_004202_020 Hb_004137_040 Hb_004137_040 Hb_000483_450--Hb_004137_040 Hb_000028_190 Hb_000028_190 Hb_000483_450--Hb_000028_190 Hb_000483_450--Hb_002221_060 Hb_003894_110 Hb_003894_110 Hb_000483_450--Hb_003894_110 Hb_000392_110 Hb_000392_110 Hb_000483_450--Hb_000392_110 Hb_004202_020--Hb_001047_090 Hb_040852_010 Hb_040852_010 Hb_004202_020--Hb_040852_010 Hb_004202_020--Hb_003894_110 Hb_004202_020--Hb_000392_110 Hb_003376_020 Hb_003376_020 Hb_004202_020--Hb_003376_020 Hb_000742_070 Hb_000742_070 Hb_000815_050--Hb_000742_070 Hb_023582_030 Hb_023582_030 Hb_000815_050--Hb_023582_030 Hb_000933_030 Hb_000933_030 Hb_000815_050--Hb_000933_030 Hb_004079_070 Hb_004079_070 Hb_000815_050--Hb_004079_070 Hb_000134_190 Hb_000134_190 Hb_000815_050--Hb_000134_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.10532 0.207171 9.32364 16.7035 0.0493797 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.172746 7.88866

CAGE analysis