Hb_012654_010

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig12654: 24118-30215
Sequence    

Annotation

kegg
ID rcu:RCOM_0813700
description hypothetical protein
nr
ID XP_012066886.1
description PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
swissprot
ID C0HIA3
description Single myb histone 6 OS=Zea mays GN=SMH6 PE=2 SV=1
trembl
ID B9RYJ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0813700 PE=4 SV=1
Gene Ontology
ID GO:0003677
description telomeric repeat-binding factor 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07998: 24665-30060 , PASA_asmbl_07999: 24049-30060 , PASA_asmbl_08000: 24049-30060
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012654_010 0.0 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
2 Hb_001504_160 0.0515013977 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
3 Hb_000107_100 0.0600034416 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
4 Hb_000139_250 0.0630060373 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
5 Hb_001057_010 0.0640838098 - - cation-transporting atpase plant, putative [Ricinus communis]
6 Hb_005214_160 0.0683574122 - - PREDICTED: heat shock 70 kDa protein, mitochondrial [Jatropha curcas]
7 Hb_002701_080 0.0702198581 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]
8 Hb_000001_180 0.071146911 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
9 Hb_002007_250 0.0732348463 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000340_510 0.0762316782 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
11 Hb_003384_030 0.0774293381 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
12 Hb_000076_080 0.0776210652 - - PREDICTED: protein MOS2 [Jatropha curcas]
13 Hb_000398_190 0.0788178746 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
14 Hb_000230_330 0.0805554393 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
15 Hb_017168_010 0.0806327321 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009620_040 0.0806483593 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
17 Hb_010222_080 0.0821981366 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
18 Hb_000977_180 0.0830015152 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
19 Hb_005237_010 0.0830255478 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
20 Hb_004724_360 0.08344373 - - OTU-like cysteine protease family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_012654_010 Hb_012654_010 Hb_001504_160 Hb_001504_160 Hb_012654_010--Hb_001504_160 Hb_000107_100 Hb_000107_100 Hb_012654_010--Hb_000107_100 Hb_000139_250 Hb_000139_250 Hb_012654_010--Hb_000139_250 Hb_001057_010 Hb_001057_010 Hb_012654_010--Hb_001057_010 Hb_005214_160 Hb_005214_160 Hb_012654_010--Hb_005214_160 Hb_002701_080 Hb_002701_080 Hb_012654_010--Hb_002701_080 Hb_000076_080 Hb_000076_080 Hb_001504_160--Hb_000076_080 Hb_000230_330 Hb_000230_330 Hb_001504_160--Hb_000230_330 Hb_004724_360 Hb_004724_360 Hb_001504_160--Hb_004724_360 Hb_001504_160--Hb_000107_100 Hb_003384_030 Hb_003384_030 Hb_001504_160--Hb_003384_030 Hb_017168_010 Hb_017168_010 Hb_000107_100--Hb_017168_010 Hb_000340_510 Hb_000340_510 Hb_000107_100--Hb_000340_510 Hb_001040_170 Hb_001040_170 Hb_000107_100--Hb_001040_170 Hb_001366_040 Hb_001366_040 Hb_000107_100--Hb_001366_040 Hb_002942_220 Hb_002942_220 Hb_000139_250--Hb_002942_220 Hb_023001_020 Hb_023001_020 Hb_000139_250--Hb_023001_020 Hb_000424_010 Hb_000424_010 Hb_000139_250--Hb_000424_010 Hb_000803_300 Hb_000803_300 Hb_000139_250--Hb_000803_300 Hb_144787_030 Hb_144787_030 Hb_000139_250--Hb_144787_030 Hb_001057_010--Hb_000340_510 Hb_005237_010 Hb_005237_010 Hb_001057_010--Hb_005237_010 Hb_001057_010--Hb_017168_010 Hb_003097_190 Hb_003097_190 Hb_001057_010--Hb_003097_190 Hb_001057_010--Hb_002942_220 Hb_000977_180 Hb_000977_180 Hb_005214_160--Hb_000977_180 Hb_009620_040 Hb_009620_040 Hb_005214_160--Hb_009620_040 Hb_007364_010 Hb_007364_010 Hb_005214_160--Hb_007364_010 Hb_004567_100 Hb_004567_100 Hb_005214_160--Hb_004567_100 Hb_002097_090 Hb_002097_090 Hb_005214_160--Hb_002097_090 Hb_011612_010 Hb_011612_010 Hb_002701_080--Hb_011612_010 Hb_000398_190 Hb_000398_190 Hb_002701_080--Hb_000398_190 Hb_002701_080--Hb_001504_160 Hb_002701_080--Hb_009620_040 Hb_002701_080--Hb_000230_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.2758 28.0524 11.0549 12.8846 81.961 65.2629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.6342 30.7493 35.9129 21.9963 10.302

CAGE analysis