Hb_012654_030

Information

Type -
Description -
Location Contig12654: 72342-73300
Sequence    

Annotation

kegg
ID rcu:RCOM_0813680
description hypothetical protein
nr
ID XP_002518777.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RYJ3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0813680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012654_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005389_130 0.2474374055 - - hypothetical protein CICLE_v10009852mg [Citrus clementina]
3 Hb_003788_060 0.2694627037 - - PREDICTED: protein MKS1-like [Populus euphratica]
4 Hb_001994_010 0.3157298242 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_013394_020 0.3236899523 - - PREDICTED: putative laccase-9 [Vitis vinifera]
6 Hb_007809_070 0.3504098942 - - conserved hypothetical protein [Ricinus communis]
7 Hb_022790_030 0.3520129593 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
8 Hb_047735_010 0.3531014924 - - DNA/RNA polymerases superfamily protein, putative [Theobroma cacao]
9 Hb_155103_010 0.3637239893 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_003589_010 0.364594489 - - -
11 Hb_008948_030 0.365170281 - - hypothetical protein RCOM_0224470 [Ricinus communis]
12 Hb_003878_160 0.366267751 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000594_170 0.3701622379 - - -
14 Hb_181132_010 0.3704938663 - - -
15 Hb_000757_080 0.3715767665 - - vacuolar ATP synthase subunit G plant, putative [Ricinus communis]
16 Hb_074683_010 0.3753517057 - - -
17 Hb_015836_010 0.3753777675 - - -
18 Hb_100821_010 0.3754282965 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
19 Hb_002928_080 0.3772344629 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
20 Hb_002392_060 0.3774584557 - - gag/pol protein [Bryonia dioica]

Gene co-expression network

sample Hb_012654_030 Hb_012654_030 Hb_005389_130 Hb_005389_130 Hb_012654_030--Hb_005389_130 Hb_003788_060 Hb_003788_060 Hb_012654_030--Hb_003788_060 Hb_001994_010 Hb_001994_010 Hb_012654_030--Hb_001994_010 Hb_013394_020 Hb_013394_020 Hb_012654_030--Hb_013394_020 Hb_007809_070 Hb_007809_070 Hb_012654_030--Hb_007809_070 Hb_022790_030 Hb_022790_030 Hb_012654_030--Hb_022790_030 Hb_005389_130--Hb_001994_010 Hb_074683_010 Hb_074683_010 Hb_005389_130--Hb_074683_010 Hb_002027_370 Hb_002027_370 Hb_005389_130--Hb_002027_370 Hb_017214_050 Hb_017214_050 Hb_005389_130--Hb_017214_050 Hb_015836_010 Hb_015836_010 Hb_005389_130--Hb_015836_010 Hb_125935_010 Hb_125935_010 Hb_003788_060--Hb_125935_010 Hb_000758_040 Hb_000758_040 Hb_003788_060--Hb_000758_040 Hb_113250_010 Hb_113250_010 Hb_003788_060--Hb_113250_010 Hb_003788_060--Hb_005389_130 Hb_003788_060--Hb_001994_010 Hb_001994_010--Hb_074683_010 Hb_001994_010--Hb_002027_370 Hb_001994_010--Hb_017214_050 Hb_001994_010--Hb_015836_010 Hb_033594_010 Hb_033594_010 Hb_001994_010--Hb_033594_010 Hb_067466_010 Hb_067466_010 Hb_013394_020--Hb_067466_010 Hb_002217_420 Hb_002217_420 Hb_013394_020--Hb_002217_420 Hb_003925_030 Hb_003925_030 Hb_013394_020--Hb_003925_030 Hb_005679_100 Hb_005679_100 Hb_013394_020--Hb_005679_100 Hb_006769_010 Hb_006769_010 Hb_013394_020--Hb_006769_010 Hb_007809_070--Hb_022790_030 Hb_047735_010 Hb_047735_010 Hb_007809_070--Hb_047735_010 Hb_155103_010 Hb_155103_010 Hb_007809_070--Hb_155103_010 Hb_003589_010 Hb_003589_010 Hb_007809_070--Hb_003589_010 Hb_008948_030 Hb_008948_030 Hb_007809_070--Hb_008948_030 Hb_003878_160 Hb_003878_160 Hb_007809_070--Hb_003878_160 Hb_022790_030--Hb_047735_010 Hb_022790_030--Hb_155103_010 Hb_022790_030--Hb_003589_010 Hb_022790_030--Hb_008948_030 Hb_022790_030--Hb_003878_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.466204 0 0 0 0.059926 0.0533952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.218771 0 0.683564 0

CAGE analysis