Hb_012660_010

Information

Type -
Description -
Location Contig12660: 26258-31149
Sequence    

Annotation

kegg
ID rcu:RCOM_0586410
description polygalacturonase, putative
nr
ID KDP22140.1
description hypothetical protein JCGZ_25971 [Jatropha curcas]
swissprot
ID Q0JEP3
description BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2
trembl
ID A0A067JQ73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25971 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012660_010 0.0 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
2 Hb_020332_040 0.0574012637 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
3 Hb_107258_010 0.0625033812 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
4 Hb_011486_030 0.0657191662 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
5 Hb_001288_010 0.0695128574 - - -
6 Hb_001863_290 0.0801154883 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
7 Hb_000301_030 0.0821133506 - - PREDICTED: pectate lyase-like [Jatropha curcas]
8 Hb_001442_080 0.0830380379 transcription factor TF Family: MYB-related transcription factor MYB251 [Fagus crenata]
9 Hb_000189_260 0.0868215661 - - conserved hypothetical protein [Ricinus communis]
10 Hb_027141_010 0.0884458383 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_000281_200 0.0962297437 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
12 Hb_003855_070 0.096778878 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
13 Hb_004564_010 0.0972174787 - - receptor-kinase, putative [Ricinus communis]
14 Hb_178389_020 0.1037274004 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
15 Hb_005356_010 0.1038707624 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
16 Hb_003968_020 0.1041997352 - - PREDICTED: limonoid UDP-glucosyltransferase-like [Glycine max]
17 Hb_002965_020 0.1051964312 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
18 Hb_000140_260 0.1073526843 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
19 Hb_002917_010 0.1079156215 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
20 Hb_002048_010 0.1097424234 - - unknown [Lotus japonicus]

Gene co-expression network

sample Hb_012660_010 Hb_012660_010 Hb_020332_040 Hb_020332_040 Hb_012660_010--Hb_020332_040 Hb_107258_010 Hb_107258_010 Hb_012660_010--Hb_107258_010 Hb_011486_030 Hb_011486_030 Hb_012660_010--Hb_011486_030 Hb_001288_010 Hb_001288_010 Hb_012660_010--Hb_001288_010 Hb_001863_290 Hb_001863_290 Hb_012660_010--Hb_001863_290 Hb_000301_030 Hb_000301_030 Hb_012660_010--Hb_000301_030 Hb_000189_260 Hb_000189_260 Hb_020332_040--Hb_000189_260 Hb_002048_010 Hb_002048_010 Hb_020332_040--Hb_002048_010 Hb_020332_040--Hb_011486_030 Hb_027141_010 Hb_027141_010 Hb_020332_040--Hb_027141_010 Hb_000976_020 Hb_000976_020 Hb_020332_040--Hb_000976_020 Hb_107258_010--Hb_001863_290 Hb_001442_080 Hb_001442_080 Hb_107258_010--Hb_001442_080 Hb_011824_010 Hb_011824_010 Hb_107258_010--Hb_011824_010 Hb_004564_010 Hb_004564_010 Hb_107258_010--Hb_004564_010 Hb_010712_020 Hb_010712_020 Hb_107258_010--Hb_010712_020 Hb_011486_030--Hb_027141_010 Hb_011486_030--Hb_000301_030 Hb_000076_200 Hb_000076_200 Hb_011486_030--Hb_000076_200 Hb_011486_030--Hb_001288_010 Hb_000281_200 Hb_000281_200 Hb_001288_010--Hb_000281_200 Hb_001288_010--Hb_004564_010 Hb_178389_020 Hb_178389_020 Hb_001288_010--Hb_178389_020 Hb_001288_010--Hb_001442_080 Hb_003968_020 Hb_003968_020 Hb_001288_010--Hb_003968_020 Hb_001863_290--Hb_011824_010 Hb_001863_290--Hb_001442_080 Hb_001863_290--Hb_010712_020 Hb_001863_290--Hb_004564_010 Hb_064398_010 Hb_064398_010 Hb_001863_290--Hb_064398_010 Hb_003855_070 Hb_003855_070 Hb_000301_030--Hb_003855_070 Hb_005356_010 Hb_005356_010 Hb_000301_030--Hb_005356_010 Hb_000301_030--Hb_107258_010 Hb_000648_120 Hb_000648_120 Hb_000301_030--Hb_000648_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.05199 0.199064 1.1141 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0249484 0 0 18.2907 0.579157

CAGE analysis