Hb_012662_010

Information

Type -
Description -
Location Contig12662: 26205-41002
Sequence    

Annotation

kegg
ID rcu:RCOM_0866620
description Casbene synthase, chloroplast precursor, putative (EC:4.2.3.8)
nr
ID KDP37851.1
description hypothetical protein JCGZ_06358 [Jatropha curcas]
swissprot
ID B9S1N2
description Probable terpene synthase 8 OS=Ricinus communis GN=TPS8 PE=3 SV=1
trembl
ID A0A067KNP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06358 PE=4 SV=1
Gene Ontology
ID GO:0000287
description casbene chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08057: 33996-34722
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012662_010 0.0 - - hypothetical protein JCGZ_06358 [Jatropha curcas]
2 Hb_010098_080 0.1503749087 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
3 Hb_003018_180 0.1578061812 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
4 Hb_001993_020 0.1618459536 - - hypothetical protein JCGZ_02641 [Jatropha curcas]
5 Hb_001780_060 0.1648964155 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
6 Hb_113951_010 0.1700789495 - - hypothetical protein JCGZ_06358 [Jatropha curcas]
7 Hb_000500_310 0.1713202275 - - -
8 Hb_027751_040 0.1740780443 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
9 Hb_003253_010 0.1762905905 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
10 Hb_000784_130 0.177543356 - - hypothetical protein JCGZ_22813 [Jatropha curcas]
11 Hb_006735_040 0.1794065554 - - unnamed protein product [Vitis vinifera]
12 Hb_001454_390 0.182115782 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
13 Hb_000130_390 0.187249694 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
14 Hb_001980_020 0.1902478439 - - -
15 Hb_004545_150 0.1974380676 - - PREDICTED: paramyosin [Jatropha curcas]
16 Hb_009662_030 0.1999790861 - - hypothetical protein JCGZ_15748 [Jatropha curcas]
17 Hb_000523_020 0.2006213722 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
18 Hb_003745_010 0.201421473 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
19 Hb_002875_090 0.2061843546 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000352_150 0.2063018919 - - hypothetical protein JCGZ_11641 [Jatropha curcas]

Gene co-expression network

sample Hb_012662_010 Hb_012662_010 Hb_010098_080 Hb_010098_080 Hb_012662_010--Hb_010098_080 Hb_003018_180 Hb_003018_180 Hb_012662_010--Hb_003018_180 Hb_001993_020 Hb_001993_020 Hb_012662_010--Hb_001993_020 Hb_001780_060 Hb_001780_060 Hb_012662_010--Hb_001780_060 Hb_113951_010 Hb_113951_010 Hb_012662_010--Hb_113951_010 Hb_000500_310 Hb_000500_310 Hb_012662_010--Hb_000500_310 Hb_003253_010 Hb_003253_010 Hb_010098_080--Hb_003253_010 Hb_010098_080--Hb_000500_310 Hb_003777_070 Hb_003777_070 Hb_010098_080--Hb_003777_070 Hb_010098_080--Hb_003018_180 Hb_002298_040 Hb_002298_040 Hb_010098_080--Hb_002298_040 Hb_002609_260 Hb_002609_260 Hb_010098_080--Hb_002609_260 Hb_000130_390 Hb_000130_390 Hb_003018_180--Hb_000130_390 Hb_001140_160 Hb_001140_160 Hb_003018_180--Hb_001140_160 Hb_000957_040 Hb_000957_040 Hb_003018_180--Hb_000957_040 Hb_003018_180--Hb_002298_040 Hb_004545_150 Hb_004545_150 Hb_003018_180--Hb_004545_150 Hb_003018_180--Hb_001780_060 Hb_027751_040 Hb_027751_040 Hb_001993_020--Hb_027751_040 Hb_000002_390 Hb_000002_390 Hb_001993_020--Hb_000002_390 Hb_001993_020--Hb_000500_310 Hb_000523_020 Hb_000523_020 Hb_001993_020--Hb_000523_020 Hb_002477_230 Hb_002477_230 Hb_001993_020--Hb_002477_230 Hb_001454_390 Hb_001454_390 Hb_001780_060--Hb_001454_390 Hb_004738_090 Hb_004738_090 Hb_001780_060--Hb_004738_090 Hb_001780_060--Hb_004545_150 Hb_001780_060--Hb_000500_310 Hb_002875_090 Hb_002875_090 Hb_001780_060--Hb_002875_090 Hb_003906_120 Hb_003906_120 Hb_001780_060--Hb_003906_120 Hb_000178_110 Hb_000178_110 Hb_113951_010--Hb_000178_110 Hb_000784_130 Hb_000784_130 Hb_113951_010--Hb_000784_130 Hb_000699_120 Hb_000699_120 Hb_113951_010--Hb_000699_120 Hb_015974_010 Hb_015974_010 Hb_113951_010--Hb_015974_010 Hb_113951_010--Hb_000130_390 Hb_000500_310--Hb_004738_090 Hb_000500_310--Hb_001140_160 Hb_000500_310--Hb_004545_150 Hb_000500_310--Hb_002609_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0275 0.0123356 0 0 6.12923 1.96522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.78759 3.76453 3.60124 0.597416 0

CAGE analysis