Hb_012670_140

Information

Type -
Description -
Location Contig12670: 159833-163673
Sequence    

Annotation

kegg
ID rcu:RCOM_1014080
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012091736.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Jatropha curcas]
swissprot
ID Q1PFQ9
description Pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2 SV=2
trembl
ID A0A067JB82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21537 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08066: 160467-160773 , PASA_asmbl_08067: 161903-163649 , PASA_asmbl_08068: 163249-163721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012670_140 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Jatropha curcas]
2 Hb_002205_040 0.0876551406 - - nucleic acid binding protein, putative [Ricinus communis]
3 Hb_001014_050 0.0877700328 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
4 Hb_007108_030 0.0913910978 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_006816_320 0.0933133586 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
6 Hb_001141_330 0.094668943 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
7 Hb_001789_240 0.0956695372 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
8 Hb_000977_070 0.0964556532 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
9 Hb_005188_050 0.0975408467 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
10 Hb_144787_030 0.0983130465 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
11 Hb_005245_130 0.1001783259 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
12 Hb_004096_030 0.1015384347 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
13 Hb_009620_040 0.1019611445 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
14 Hb_004934_090 0.102654423 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
15 Hb_001157_060 0.1028305394 - - PREDICTED: putative nitric oxide synthase [Jatropha curcas]
16 Hb_000803_190 0.1040415931 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
17 Hb_005914_060 0.1050914278 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
18 Hb_000827_070 0.106138463 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
19 Hb_004970_150 0.106377907 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
20 Hb_002097_090 0.1084474624 - - Splicing factor 3A subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_012670_140 Hb_012670_140 Hb_002205_040 Hb_002205_040 Hb_012670_140--Hb_002205_040 Hb_001014_050 Hb_001014_050 Hb_012670_140--Hb_001014_050 Hb_007108_030 Hb_007108_030 Hb_012670_140--Hb_007108_030 Hb_006816_320 Hb_006816_320 Hb_012670_140--Hb_006816_320 Hb_001141_330 Hb_001141_330 Hb_012670_140--Hb_001141_330 Hb_001789_240 Hb_001789_240 Hb_012670_140--Hb_001789_240 Hb_023386_040 Hb_023386_040 Hb_002205_040--Hb_023386_040 Hb_002890_020 Hb_002890_020 Hb_002205_040--Hb_002890_020 Hb_002205_040--Hb_001014_050 Hb_000926_190 Hb_000926_190 Hb_002205_040--Hb_000926_190 Hb_000207_310 Hb_000207_310 Hb_002205_040--Hb_000207_310 Hb_022693_120 Hb_022693_120 Hb_002205_040--Hb_022693_120 Hb_005245_130 Hb_005245_130 Hb_001014_050--Hb_005245_130 Hb_003849_060 Hb_003849_060 Hb_001014_050--Hb_003849_060 Hb_000794_050 Hb_000794_050 Hb_001014_050--Hb_000794_050 Hb_011942_080 Hb_011942_080 Hb_001014_050--Hb_011942_080 Hb_000462_140 Hb_000462_140 Hb_001014_050--Hb_000462_140 Hb_002150_030 Hb_002150_030 Hb_007108_030--Hb_002150_030 Hb_009411_010 Hb_009411_010 Hb_007108_030--Hb_009411_010 Hb_001797_050 Hb_001797_050 Hb_007108_030--Hb_001797_050 Hb_003428_070 Hb_003428_070 Hb_007108_030--Hb_003428_070 Hb_003506_080 Hb_003506_080 Hb_007108_030--Hb_003506_080 Hb_001866_110 Hb_001866_110 Hb_007108_030--Hb_001866_110 Hb_000041_220 Hb_000041_220 Hb_006816_320--Hb_000041_220 Hb_000236_370 Hb_000236_370 Hb_006816_320--Hb_000236_370 Hb_000684_420 Hb_000684_420 Hb_006816_320--Hb_000684_420 Hb_000076_080 Hb_000076_080 Hb_006816_320--Hb_000076_080 Hb_000803_150 Hb_000803_150 Hb_006816_320--Hb_000803_150 Hb_002026_110 Hb_002026_110 Hb_001141_330--Hb_002026_110 Hb_000977_070 Hb_000977_070 Hb_001141_330--Hb_000977_070 Hb_004324_280 Hb_004324_280 Hb_001141_330--Hb_004324_280 Hb_005307_030 Hb_005307_030 Hb_001141_330--Hb_005307_030 Hb_000236_100 Hb_000236_100 Hb_001141_330--Hb_000236_100 Hb_000340_510 Hb_000340_510 Hb_001141_330--Hb_000340_510 Hb_063090_010 Hb_063090_010 Hb_001789_240--Hb_063090_010 Hb_000373_240 Hb_000373_240 Hb_001789_240--Hb_000373_240 Hb_009133_010 Hb_009133_010 Hb_001789_240--Hb_009133_010 Hb_006692_030 Hb_006692_030 Hb_001789_240--Hb_006692_030 Hb_001789_240--Hb_002205_040 Hb_002391_300 Hb_002391_300 Hb_001789_240--Hb_002391_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.50275 1.73017 0.942513 0.304963 2.74472 3.67384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.36475 2.31291 1.53771 1.29405 1.0144

CAGE analysis