Hb_012675_050

Information

Type -
Description -
Location Contig12675: 44541-49686
Sequence    

Annotation

kegg
ID rcu:RCOM_0610390
description hypothetical protein
nr
ID XP_002522015.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9DAA6
description Exosome complex component CSL4 OS=Mus musculus GN=Exosc1 PE=2 SV=1
trembl
ID B9S7P6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0610390 PE=4 SV=1
Gene Ontology
ID GO:0000178
description exosome complex component csl4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08079: 46495-49669
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012675_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011909_100 0.0560381377 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000107_160 0.0658475716 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
4 Hb_000061_210 0.0703148551 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
5 Hb_000046_050 0.0730312225 - - PREDICTED: LEC14B homolog [Jatropha curcas]
6 Hb_103118_010 0.0736491172 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
7 Hb_002408_020 0.0769908495 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
8 Hb_000059_370 0.0787791018 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
9 Hb_029879_130 0.078925304 - - Derlin-2, putative [Ricinus communis]
10 Hb_008453_030 0.0796692374 - - Thioredoxin superfamily protein [Theobroma cacao]
11 Hb_001105_030 0.0799060685 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
12 Hb_012423_030 0.0804579299 - - PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_004324_270 0.0807337875 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
14 Hb_000614_220 0.0808640598 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
15 Hb_026549_040 0.0822876966 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
16 Hb_004635_100 0.0845013165 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
17 Hb_000928_210 0.0845752963 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
18 Hb_032264_070 0.0848822103 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
19 Hb_000614_160 0.0896852529 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
20 Hb_000684_470 0.0900575419 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]

Gene co-expression network

sample Hb_012675_050 Hb_012675_050 Hb_011909_100 Hb_011909_100 Hb_012675_050--Hb_011909_100 Hb_000107_160 Hb_000107_160 Hb_012675_050--Hb_000107_160 Hb_000061_210 Hb_000061_210 Hb_012675_050--Hb_000061_210 Hb_000046_050 Hb_000046_050 Hb_012675_050--Hb_000046_050 Hb_103118_010 Hb_103118_010 Hb_012675_050--Hb_103118_010 Hb_002408_020 Hb_002408_020 Hb_012675_050--Hb_002408_020 Hb_001083_020 Hb_001083_020 Hb_011909_100--Hb_001083_020 Hb_001775_110 Hb_001775_110 Hb_011909_100--Hb_001775_110 Hb_008554_070 Hb_008554_070 Hb_011909_100--Hb_008554_070 Hb_011909_100--Hb_103118_010 Hb_000962_040 Hb_000962_040 Hb_011909_100--Hb_000962_040 Hb_012423_030 Hb_012423_030 Hb_000107_160--Hb_012423_030 Hb_008453_030 Hb_008453_030 Hb_000107_160--Hb_008453_030 Hb_004143_150 Hb_004143_150 Hb_000107_160--Hb_004143_150 Hb_002676_090 Hb_002676_090 Hb_000107_160--Hb_002676_090 Hb_004324_270 Hb_004324_270 Hb_000107_160--Hb_004324_270 Hb_000061_210--Hb_103118_010 Hb_000061_210--Hb_008453_030 Hb_000061_210--Hb_002408_020 Hb_000421_220 Hb_000421_220 Hb_000061_210--Hb_000421_220 Hb_001049_110 Hb_001049_110 Hb_000061_210--Hb_001049_110 Hb_000046_050--Hb_004324_270 Hb_032264_070 Hb_032264_070 Hb_000046_050--Hb_032264_070 Hb_003540_240 Hb_003540_240 Hb_000046_050--Hb_003540_240 Hb_000046_050--Hb_000061_210 Hb_000046_050--Hb_000107_160 Hb_000861_020 Hb_000861_020 Hb_103118_010--Hb_000861_020 Hb_003688_150 Hb_003688_150 Hb_103118_010--Hb_003688_150 Hb_103118_010--Hb_002408_020 Hb_103118_010--Hb_000046_050 Hb_000260_030 Hb_000260_030 Hb_002408_020--Hb_000260_030 Hb_002408_020--Hb_004324_270 Hb_029879_130 Hb_029879_130 Hb_002408_020--Hb_029879_130 Hb_001322_110 Hb_001322_110 Hb_002408_020--Hb_001322_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.52404 6.07204 7.70337 6.52893 10.3321 10.5242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1414 21.5004 15.2927 7.45146 14.1894

CAGE analysis