Hb_012675_070

Information

Type -
Description -
Location Contig12675: 50940-52683
Sequence    

Annotation

kegg
ID pxb:103927203
description cytoplasmic tRNA 2-thiolation protein 1
nr
ID XP_009334379.1
description PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pyrus x bretschneideri]
swissprot
ID B4KLL0
description Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosophila mojavensis GN=GI19452 PE=3 SV=1
trembl
ID A0A059BW08
description Cytoplasmic tRNA 2-thiolation protein 1 OS=Eucalyptus grandis GN=NCS6 PE=3 SV=1
Gene Ontology
ID GO:0044238
description cytoplasmic trna 2-thiolation protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012675_070 0.0 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pyrus x bretschneideri]
2 Hb_005588_070 0.0899634794 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
3 Hb_002259_160 0.0954481982 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
4 Hb_000083_170 0.0982667518 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
5 Hb_003352_040 0.0985790633 - - PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]
6 Hb_037887_010 0.101112677 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
7 Hb_005400_030 0.1057787052 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
8 Hb_074979_020 0.1058367605 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000152_550 0.1110466221 - - PREDICTED: UMP-CMP kinase [Vitis vinifera]
10 Hb_012653_040 0.1132449578 - - UV-induced protein uvi31, putative [Ricinus communis]
11 Hb_000326_090 0.1152526853 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
12 Hb_031089_040 0.1156934246 - - thioredoxin H-type 1 [Hevea brasiliensis]
13 Hb_007735_030 0.1173193038 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
14 Hb_067776_010 0.1182535407 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
15 Hb_005867_020 0.1191629863 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
16 Hb_172706_030 0.1200877729 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
17 Hb_000648_030 0.1217410821 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
18 Hb_001504_080 0.1219736686 - - golgi snare 11 protein, putative [Ricinus communis]
19 Hb_180301_010 0.1222509266 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
20 Hb_000107_310 0.123627004 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]

Gene co-expression network

sample Hb_012675_070 Hb_012675_070 Hb_005588_070 Hb_005588_070 Hb_012675_070--Hb_005588_070 Hb_002259_160 Hb_002259_160 Hb_012675_070--Hb_002259_160 Hb_000083_170 Hb_000083_170 Hb_012675_070--Hb_000083_170 Hb_003352_040 Hb_003352_040 Hb_012675_070--Hb_003352_040 Hb_037887_010 Hb_037887_010 Hb_012675_070--Hb_037887_010 Hb_005400_030 Hb_005400_030 Hb_012675_070--Hb_005400_030 Hb_004336_050 Hb_004336_050 Hb_005588_070--Hb_004336_050 Hb_180301_010 Hb_180301_010 Hb_005588_070--Hb_180301_010 Hb_001504_080 Hb_001504_080 Hb_005588_070--Hb_001504_080 Hb_000672_120 Hb_000672_120 Hb_005588_070--Hb_000672_120 Hb_002878_010 Hb_002878_010 Hb_005588_070--Hb_002878_010 Hb_002259_160--Hb_000083_170 Hb_002259_160--Hb_037887_010 Hb_002259_160--Hb_003352_040 Hb_000326_090 Hb_000326_090 Hb_002259_160--Hb_000326_090 Hb_041205_010 Hb_041205_010 Hb_002259_160--Hb_041205_010 Hb_000083_170--Hb_037887_010 Hb_005867_020 Hb_005867_020 Hb_000083_170--Hb_005867_020 Hb_000162_260 Hb_000162_260 Hb_000083_170--Hb_000162_260 Hb_000083_170--Hb_000326_090 Hb_012653_040 Hb_012653_040 Hb_000083_170--Hb_012653_040 Hb_003352_040--Hb_000083_170 Hb_003352_040--Hb_037887_010 Hb_001268_050 Hb_001268_050 Hb_003352_040--Hb_001268_050 Hb_003352_040--Hb_001504_080 Hb_003092_030 Hb_003092_030 Hb_037887_010--Hb_003092_030 Hb_000898_050 Hb_000898_050 Hb_037887_010--Hb_000898_050 Hb_006198_080 Hb_006198_080 Hb_037887_010--Hb_006198_080 Hb_006429_010 Hb_006429_010 Hb_037887_010--Hb_006429_010 Hb_001584_190 Hb_001584_190 Hb_037887_010--Hb_001584_190 Hb_004032_100 Hb_004032_100 Hb_005400_030--Hb_004032_100 Hb_007735_030 Hb_007735_030 Hb_005400_030--Hb_007735_030 Hb_000152_550 Hb_000152_550 Hb_005400_030--Hb_000152_550 Hb_000086_550 Hb_000086_550 Hb_005400_030--Hb_000086_550 Hb_000024_080 Hb_000024_080 Hb_005400_030--Hb_000024_080 Hb_148209_080 Hb_148209_080 Hb_005400_030--Hb_148209_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64147 1.06045 1.56436 4.27219 0.989232 7.93997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.85178 6.78858 4.56712 1.99545 1.5318

CAGE analysis