Hb_012678_010

Information

Type -
Description -
Location Contig12678: 16425-20080
Sequence    

Annotation

kegg
ID tcc:TCM_041189
description Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1
nr
ID XP_012472877.1
description PREDICTED: outer envelope protein 61-like [Gossypium raimondii]
swissprot
ID B7ZWR6
description Outer envelope protein 61 OS=Arabidopsis thaliana GN=OEP61 PE=1 SV=1
trembl
ID A0A0D2P4Y9
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G011700 PE=4 SV=1
Gene Ontology
ID GO:0005789
description outer envelope protein 61-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08085: 16484-16617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012678_010 0.0 - - PREDICTED: outer envelope protein 61-like [Gossypium raimondii]
2 Hb_003780_020 0.0582941461 - - PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X2 [Glycine max]
3 Hb_012678_020 0.1034551169 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]
4 Hb_007558_100 0.113935354 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
5 Hb_000784_070 0.134570536 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
6 Hb_138475_010 0.1421101027 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Populus euphratica]
7 Hb_000586_030 0.1441546355 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
8 Hb_000976_100 0.1451572757 - - eukaryotic translation elongation factor, putative [Ricinus communis]
9 Hb_007383_020 0.1453825605 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005218_020 0.1457195423 - - Uncharacterized protein isoform 3 [Theobroma cacao]
11 Hb_055062_040 0.1478031421 - - ceramidase, putative [Ricinus communis]
12 Hb_127552_060 0.1484091767 transcription factor TF Family: SWI/SNF-BAF60b protein binding protein, putative [Ricinus communis]
13 Hb_000237_040 0.1492327439 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
14 Hb_003747_020 0.1505552961 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [Jatropha curcas]
15 Hb_004046_030 0.1511932758 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
16 Hb_004116_170 0.1514962025 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
17 Hb_099116_010 0.1517568709 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002150_040 0.1525589723 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
19 Hb_002686_310 0.1527027507 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
20 Hb_163975_010 0.1542901208 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_012678_010 Hb_012678_010 Hb_003780_020 Hb_003780_020 Hb_012678_010--Hb_003780_020 Hb_012678_020 Hb_012678_020 Hb_012678_010--Hb_012678_020 Hb_007558_100 Hb_007558_100 Hb_012678_010--Hb_007558_100 Hb_000784_070 Hb_000784_070 Hb_012678_010--Hb_000784_070 Hb_138475_010 Hb_138475_010 Hb_012678_010--Hb_138475_010 Hb_000586_030 Hb_000586_030 Hb_012678_010--Hb_000586_030 Hb_003780_020--Hb_012678_020 Hb_003780_020--Hb_007558_100 Hb_002150_040 Hb_002150_040 Hb_003780_020--Hb_002150_040 Hb_005218_020 Hb_005218_020 Hb_003780_020--Hb_005218_020 Hb_004881_030 Hb_004881_030 Hb_003780_020--Hb_004881_030 Hb_012678_020--Hb_007558_100 Hb_002093_060 Hb_002093_060 Hb_012678_020--Hb_002093_060 Hb_007383_020 Hb_007383_020 Hb_012678_020--Hb_007383_020 Hb_004046_030 Hb_004046_030 Hb_012678_020--Hb_004046_030 Hb_000800_090 Hb_000800_090 Hb_012678_020--Hb_000800_090 Hb_003206_110 Hb_003206_110 Hb_012678_020--Hb_003206_110 Hb_000429_150 Hb_000429_150 Hb_007558_100--Hb_000429_150 Hb_002414_060 Hb_002414_060 Hb_007558_100--Hb_002414_060 Hb_002686_310 Hb_002686_310 Hb_007558_100--Hb_002686_310 Hb_055062_040 Hb_055062_040 Hb_007558_100--Hb_055062_040 Hb_084670_010 Hb_084670_010 Hb_007558_100--Hb_084670_010 Hb_000718_080 Hb_000718_080 Hb_000784_070--Hb_000718_080 Hb_000031_110 Hb_000031_110 Hb_000784_070--Hb_000031_110 Hb_000960_040 Hb_000960_040 Hb_000784_070--Hb_000960_040 Hb_000130_180 Hb_000130_180 Hb_000784_070--Hb_000130_180 Hb_027337_100 Hb_027337_100 Hb_000784_070--Hb_027337_100 Hb_000872_010 Hb_000872_010 Hb_000784_070--Hb_000872_010 Hb_138475_010--Hb_007558_100 Hb_008970_030 Hb_008970_030 Hb_138475_010--Hb_008970_030 Hb_138475_010--Hb_002414_060 Hb_000917_130 Hb_000917_130 Hb_138475_010--Hb_000917_130 Hb_062537_010 Hb_062537_010 Hb_138475_010--Hb_062537_010 Hb_000787_160 Hb_000787_160 Hb_138475_010--Hb_000787_160 Hb_003606_060 Hb_003606_060 Hb_000586_030--Hb_003606_060 Hb_038564_010 Hb_038564_010 Hb_000586_030--Hb_038564_010 Hb_000168_010 Hb_000168_010 Hb_000586_030--Hb_000168_010 Hb_000586_030--Hb_003780_020 Hb_001894_070 Hb_001894_070 Hb_000586_030--Hb_001894_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4085 0.540677 1.45983 5.51467 1.61251 4.00084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04596 1.80201 2.23729 5.44896 4.17143

CAGE analysis