Hb_012691_010

Information

Type -
Description -
Location Contig12691: 6457-8817
Sequence    

Annotation

kegg
ID pop:POPTR_0005s18750g
description hypothetical protein
nr
ID XP_006383540.1
description hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
swissprot
ID O22187
description Probable receptor-like protein kinase At2g23200 OS=Arabidopsis thaliana GN=At2g23200 PE=3 SV=1
trembl
ID U5GIR9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s18750g PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at5g24010

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012691_010 0.0 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
2 Hb_006294_030 0.0882590669 - - alcohol dehydrogenase, putative [Ricinus communis]
3 Hb_000471_030 0.0888407533 - - -
4 Hb_007643_060 0.0903721128 - - -
5 Hb_005834_050 0.09949141 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
6 Hb_007951_020 0.1006130218 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
7 Hb_005743_010 0.1083442779 - - RING/U-box superfamily protein, putative [Theobroma cacao]
8 Hb_000035_150 0.1084160318 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
9 Hb_006615_220 0.1179924963 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
10 Hb_007850_100 0.1314412011 - - PREDICTED: uncharacterized protein LOC105640661 [Jatropha curcas]
11 Hb_006266_010 0.1338172688 - - unnamed protein product [Vitis vinifera]
12 Hb_002995_010 0.134381442 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
13 Hb_000343_010 0.1377621731 - - F3F9.11 [Arabidopsis thaliana]
14 Hb_068804_070 0.1404591827 - - hypothetical protein JCGZ_12627 [Jatropha curcas]
15 Hb_001634_030 0.142086249 - - Receptor like protein 1, putative [Theobroma cacao]
16 Hb_010407_150 0.1568793272 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
17 Hb_004316_080 0.1575624493 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
18 Hb_003592_060 0.159121271 - - hypothetical protein F383_11017 [Gossypium arboreum]
19 Hb_001579_190 0.1593135726 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003759_040 0.1596187311 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]

Gene co-expression network

sample Hb_012691_010 Hb_012691_010 Hb_006294_030 Hb_006294_030 Hb_012691_010--Hb_006294_030 Hb_000471_030 Hb_000471_030 Hb_012691_010--Hb_000471_030 Hb_007643_060 Hb_007643_060 Hb_012691_010--Hb_007643_060 Hb_005834_050 Hb_005834_050 Hb_012691_010--Hb_005834_050 Hb_007951_020 Hb_007951_020 Hb_012691_010--Hb_007951_020 Hb_005743_010 Hb_005743_010 Hb_012691_010--Hb_005743_010 Hb_006294_030--Hb_000471_030 Hb_001634_030 Hb_001634_030 Hb_006294_030--Hb_001634_030 Hb_006294_030--Hb_005834_050 Hb_068804_070 Hb_068804_070 Hb_006294_030--Hb_068804_070 Hb_002984_040 Hb_002984_040 Hb_006294_030--Hb_002984_040 Hb_004316_160 Hb_004316_160 Hb_000471_030--Hb_004316_160 Hb_000471_030--Hb_068804_070 Hb_000471_030--Hb_005743_010 Hb_000471_030--Hb_001634_030 Hb_000035_150 Hb_000035_150 Hb_007643_060--Hb_000035_150 Hb_006615_220 Hb_006615_220 Hb_007643_060--Hb_006615_220 Hb_007643_060--Hb_007951_020 Hb_007643_060--Hb_005743_010 Hb_000343_010 Hb_000343_010 Hb_007643_060--Hb_000343_010 Hb_002995_010 Hb_002995_010 Hb_005834_050--Hb_002995_010 Hb_001776_130 Hb_001776_130 Hb_005834_050--Hb_001776_130 Hb_005834_050--Hb_000035_150 Hb_003759_040 Hb_003759_040 Hb_005834_050--Hb_003759_040 Hb_005834_050--Hb_006615_220 Hb_007951_020--Hb_000035_150 Hb_003626_020 Hb_003626_020 Hb_007951_020--Hb_003626_020 Hb_007951_020--Hb_005743_010 Hb_007951_020--Hb_000343_010 Hb_003592_060 Hb_003592_060 Hb_005743_010--Hb_003592_060 Hb_006266_010 Hb_006266_010 Hb_005743_010--Hb_006266_010 Hb_005743_010--Hb_068804_070 Hb_005743_010--Hb_006615_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.67115 10.2264 1.43085 0.00775223 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0188033 0.0147959 0 2.63923 1.85308

CAGE analysis