Hb_012702_020

Information

Type -
Description -
Location Contig12702: 4150-5371
Sequence    

Annotation

kegg
ID pop:POPTR_0001s19040g
description hypothetical protein
nr
ID AAP53866.2
description retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID Q7XEC4
description Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os10g29210 PE=4 SV=2
Gene Ontology
ID GO:0016740
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012702_020 0.0 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
2 Hb_000101_060 0.0492966636 - - -
3 Hb_015912_010 0.0590640929 - - cytochrome P450, putative [Ricinus communis]
4 Hb_003752_130 0.0623061865 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
5 Hb_008111_020 0.1154818024 - - Receptor like protein 6, putative [Theobroma cacao]
6 Hb_002157_180 0.1186065062 - - separase, putative [Ricinus communis]
7 Hb_166257_010 0.1231225471 - - hypothetical protein JCGZ_21808 [Jatropha curcas]
8 Hb_002400_250 0.1383931225 - - amino acid binding protein, putative [Ricinus communis]
9 Hb_157122_010 0.1388620424 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
10 Hb_003085_050 0.1430332878 - - Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
11 Hb_000291_020 0.1443937625 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
12 Hb_002553_080 0.1479648303 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096-like [Eucalyptus grandis]
13 Hb_006106_020 0.161409705 - - ring finger protein, putative [Ricinus communis]
14 Hb_002787_100 0.1628826811 - - PREDICTED: uncharacterized protein LOC105637209 [Jatropha curcas]
15 Hb_000035_300 0.1645667357 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009297_010 0.1680007174 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
17 Hb_124207_010 0.1685791643 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000512_080 0.171780296 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_003117_060 0.1834689567 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
20 Hb_000343_280 0.1887580594 - - hypothetical protein JCGZ_24094 [Jatropha curcas]

Gene co-expression network

sample Hb_012702_020 Hb_012702_020 Hb_000101_060 Hb_000101_060 Hb_012702_020--Hb_000101_060 Hb_015912_010 Hb_015912_010 Hb_012702_020--Hb_015912_010 Hb_003752_130 Hb_003752_130 Hb_012702_020--Hb_003752_130 Hb_008111_020 Hb_008111_020 Hb_012702_020--Hb_008111_020 Hb_002157_180 Hb_002157_180 Hb_012702_020--Hb_002157_180 Hb_166257_010 Hb_166257_010 Hb_012702_020--Hb_166257_010 Hb_000101_060--Hb_015912_010 Hb_000101_060--Hb_166257_010 Hb_000101_060--Hb_003752_130 Hb_009297_010 Hb_009297_010 Hb_000101_060--Hb_009297_010 Hb_002553_080 Hb_002553_080 Hb_000101_060--Hb_002553_080 Hb_015912_010--Hb_003752_130 Hb_002400_250 Hb_002400_250 Hb_015912_010--Hb_002400_250 Hb_015912_010--Hb_166257_010 Hb_000035_300 Hb_000035_300 Hb_015912_010--Hb_000035_300 Hb_003752_130--Hb_008111_020 Hb_003752_130--Hb_002157_180 Hb_000291_020 Hb_000291_020 Hb_003752_130--Hb_000291_020 Hb_008111_020--Hb_002157_180 Hb_047923_010 Hb_047923_010 Hb_008111_020--Hb_047923_010 Hb_001652_050 Hb_001652_050 Hb_008111_020--Hb_001652_050 Hb_000613_270 Hb_000613_270 Hb_008111_020--Hb_000613_270 Hb_000059_290 Hb_000059_290 Hb_008111_020--Hb_000059_290 Hb_002157_180--Hb_001652_050 Hb_002157_180--Hb_047923_010 Hb_157122_010 Hb_157122_010 Hb_002157_180--Hb_157122_010 Hb_003085_050 Hb_003085_050 Hb_002157_180--Hb_003085_050 Hb_166257_010--Hb_009297_010 Hb_124207_010 Hb_124207_010 Hb_166257_010--Hb_124207_010 Hb_012553_010 Hb_012553_010 Hb_166257_010--Hb_012553_010 Hb_166257_010--Hb_000291_020 Hb_001268_070 Hb_001268_070 Hb_166257_010--Hb_001268_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0853108 0.018233 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.070657 0

CAGE analysis