Hb_012702_030

Information

Type -
Description -
Location Contig12702: 25978-26401
Sequence    

Annotation

kegg
ID pop:POPTR_0077s002001
description hypothetical protein
nr
ID XP_006388909.1
description hypothetical protein POPTR_0077s002001g, partial [Populus trichocarpa]
swissprot
ID Q9SSN3
description Toll/interleukin-1 receptor-like protein OS=Arabidopsis thaliana GN=TIR PE=1 SV=1
trembl
ID U7E1S0
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0077s002001g PE=4 SV=1
Gene Ontology
ID GO:0007165
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012702_030 0.0 - - hypothetical protein POPTR_0077s002001g, partial [Populus trichocarpa]
2 Hb_006711_050 0.0186613055 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
3 Hb_000329_640 0.0576540874 - - -
4 Hb_003673_030 0.1093610664 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
5 Hb_029475_010 0.1108609935 - - conserved hypothetical protein [Ricinus communis]
6 Hb_030399_010 0.1176007616 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
7 Hb_178817_010 0.1366648989 - - protease [Gossypium hirsutum]
8 Hb_001140_340 0.1495160913 - - -
9 Hb_031862_260 0.157924742 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003947_010 0.2383257498 - - hypothetical protein JCGZ_24829 [Jatropha curcas]
11 Hb_027506_050 0.2857161496 - - -
12 Hb_002417_030 0.2995733888 - - PREDICTED: purine permease 3-like [Jatropha curcas]
13 Hb_000521_310 0.2999280128 - - -
14 Hb_011113_020 0.3063326367 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
15 Hb_018616_030 0.3144422443 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
16 Hb_001250_110 0.3151764475 transcription factor TF Family: HB hypothetical protein POPTR_0010s05340g [Populus trichocarpa]
17 Hb_001673_110 0.3224333754 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
18 Hb_012753_080 0.3225326984 - - -
19 Hb_001545_220 0.325010019 - - hypothetical protein POPTR_0002s06170g [Populus trichocarpa]
20 Hb_004607_130 0.3328904248 - - -

Gene co-expression network

sample Hb_012702_030 Hb_012702_030 Hb_006711_050 Hb_006711_050 Hb_012702_030--Hb_006711_050 Hb_000329_640 Hb_000329_640 Hb_012702_030--Hb_000329_640 Hb_003673_030 Hb_003673_030 Hb_012702_030--Hb_003673_030 Hb_029475_010 Hb_029475_010 Hb_012702_030--Hb_029475_010 Hb_030399_010 Hb_030399_010 Hb_012702_030--Hb_030399_010 Hb_178817_010 Hb_178817_010 Hb_012702_030--Hb_178817_010 Hb_006711_050--Hb_000329_640 Hb_006711_050--Hb_003673_030 Hb_006711_050--Hb_029475_010 Hb_006711_050--Hb_178817_010 Hb_006711_050--Hb_030399_010 Hb_000329_640--Hb_030399_010 Hb_000329_640--Hb_029475_010 Hb_001140_340 Hb_001140_340 Hb_000329_640--Hb_001140_340 Hb_000329_640--Hb_003673_030 Hb_003673_030--Hb_178817_010 Hb_003673_030--Hb_029475_010 Hb_003673_030--Hb_001140_340 Hb_029475_010--Hb_001140_340 Hb_029475_010--Hb_178817_010 Hb_031862_260 Hb_031862_260 Hb_030399_010--Hb_031862_260 Hb_030399_010--Hb_003673_030 Hb_030399_010--Hb_029475_010 Hb_178817_010--Hb_001140_340 Hb_011113_020 Hb_011113_020 Hb_178817_010--Hb_011113_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221277 0.491474 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.189604 0

CAGE analysis