Hb_012707_020

Information

Type -
Description -
Location Contig12707: 11456-16868
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016787
description probable inactive purple acid phosphatase 29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08315: 13018-13399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012707_020 0.0 - - -
2 Hb_000261_300 0.1768339102 - - -
3 Hb_006615_210 0.1919885192 - - PREDICTED: uncharacterized protein LOC105640677 isoform X2 [Jatropha curcas]
4 Hb_093543_010 0.2072010253 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
5 Hb_006717_080 0.2098662163 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
6 Hb_040473_010 0.2356132973 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
7 Hb_012717_030 0.2457757928 - - hypothetical protein, partial [Pseudomonas fluorescens]
8 Hb_062671_010 0.2534151638 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
9 Hb_131872_010 0.2626480461 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_000028_380 0.2659673608 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
11 Hb_154726_010 0.2710006048 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
12 Hb_008305_010 0.2718858345 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_007885_110 0.273962208 - - PREDICTED: uncharacterized protein LOC104109376 [Nicotiana tomentosiformis]
14 Hb_000014_190 0.2740354466 - - Phytoene dehydrogenase, putative [Ricinus communis]
15 Hb_022256_070 0.2763527906 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
16 Hb_001946_130 0.2794266445 - - -
17 Hb_000300_310 0.2804173766 - - PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
18 Hb_011892_010 0.2919325239 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_011218_030 0.2957214435 - - hypothetical protein VITISV_002891 [Vitis vinifera]
20 Hb_000527_120 0.2979786097 - - hypothetical protein VITISV_027174 [Vitis vinifera]

Gene co-expression network

sample Hb_012707_020 Hb_012707_020 Hb_000261_300 Hb_000261_300 Hb_012707_020--Hb_000261_300 Hb_006615_210 Hb_006615_210 Hb_012707_020--Hb_006615_210 Hb_093543_010 Hb_093543_010 Hb_012707_020--Hb_093543_010 Hb_006717_080 Hb_006717_080 Hb_012707_020--Hb_006717_080 Hb_040473_010 Hb_040473_010 Hb_012707_020--Hb_040473_010 Hb_012717_030 Hb_012717_030 Hb_012707_020--Hb_012717_030 Hb_000261_300--Hb_006615_210 Hb_022256_070 Hb_022256_070 Hb_000261_300--Hb_022256_070 Hb_000261_300--Hb_006717_080 Hb_000527_120 Hb_000527_120 Hb_000261_300--Hb_000527_120 Hb_000375_250 Hb_000375_250 Hb_000261_300--Hb_000375_250 Hb_001355_050 Hb_001355_050 Hb_006615_210--Hb_001355_050 Hb_003927_020 Hb_003927_020 Hb_006615_210--Hb_003927_020 Hb_011218_030 Hb_011218_030 Hb_006615_210--Hb_011218_030 Hb_001946_130 Hb_001946_130 Hb_006615_210--Hb_001946_130 Hb_093543_010--Hb_006615_210 Hb_093543_010--Hb_000261_300 Hb_000028_380 Hb_000028_380 Hb_093543_010--Hb_000028_380 Hb_008305_010 Hb_008305_010 Hb_093543_010--Hb_008305_010 Hb_056506_080 Hb_056506_080 Hb_093543_010--Hb_056506_080 Hb_006717_080--Hb_000527_120 Hb_000300_310 Hb_000300_310 Hb_006717_080--Hb_000300_310 Hb_000014_190 Hb_000014_190 Hb_006717_080--Hb_000014_190 Hb_078477_060 Hb_078477_060 Hb_006717_080--Hb_078477_060 Hb_000173_110 Hb_000173_110 Hb_006717_080--Hb_000173_110 Hb_035651_010 Hb_035651_010 Hb_040473_010--Hb_035651_010 Hb_040473_010--Hb_000028_380 Hb_002973_120 Hb_002973_120 Hb_040473_010--Hb_002973_120 Hb_002529_070 Hb_002529_070 Hb_040473_010--Hb_002529_070 Hb_007885_110 Hb_007885_110 Hb_040473_010--Hb_007885_110 Hb_006111_040 Hb_006111_040 Hb_040473_010--Hb_006111_040 Hb_104721_010 Hb_104721_010 Hb_012717_030--Hb_104721_010 Hb_000011_470 Hb_000011_470 Hb_012717_030--Hb_000011_470 Hb_012717_030--Hb_006111_040 Hb_000060_070 Hb_000060_070 Hb_012717_030--Hb_000060_070 Hb_002200_100 Hb_002200_100 Hb_012717_030--Hb_002200_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.164003 0.0449794 0 0 0.0346331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.180055 0.0354062 0 0.241528 0.801924

CAGE analysis