Hb_012725_050

Information

Type transcription factor
Description TF Family: SET
Location Contig12725: 56782-63230
Sequence    

Annotation

kegg
ID rcu:RCOM_0666040
description set domain protein, putative (EC:2.1.1.43)
nr
ID XP_002528669.1
description set domain protein, putative [Ricinus communis]
swissprot
ID Q84WW6
description Histone-lysine N-methyltransferase ASHH1 OS=Arabidopsis thaliana GN=ASHH1 PE=1 SV=1
trembl
ID B9SRQ0
description Histone-lysine N-methyltransferase OS=Ricinus communis GN=RCOM_0666040 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n-methyltransferase ashh1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08323: 56732-58298 , PASA_asmbl_08324: 58313-61273 , PASA_asmbl_08325: 59080-59247 , PASA_asmbl_08326: 61274-63230
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012725_050 0.0 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
2 Hb_001105_030 0.0537220782 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
3 Hb_001157_020 0.057271823 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
4 Hb_001821_010 0.0580913523 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
5 Hb_028227_020 0.0645646146 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
6 Hb_002214_040 0.0648637283 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
7 Hb_000331_080 0.0659868368 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
8 Hb_002686_020 0.0674419906 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
9 Hb_005306_170 0.0687931962 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
10 Hb_009838_080 0.0700205393 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
11 Hb_008648_010 0.0705556229 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
12 Hb_002477_070 0.0715849839 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
13 Hb_000046_280 0.0719339911 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
14 Hb_024682_010 0.0726507901 - - sterol isomerase, putative [Ricinus communis]
15 Hb_118707_030 0.0747986264 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
16 Hb_001662_150 0.0756301216 - - Scaffold attachment factor B1 [Medicago truncatula]
17 Hb_153112_020 0.0758916893 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
18 Hb_004735_040 0.0767690732 - - PREDICTED: GTP-binding nuclear protein Ran1A-like [Jatropha curcas]
19 Hb_000059_370 0.0780363511 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
20 Hb_004048_110 0.0792505725 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_012725_050 Hb_012725_050 Hb_001105_030 Hb_001105_030 Hb_012725_050--Hb_001105_030 Hb_001157_020 Hb_001157_020 Hb_012725_050--Hb_001157_020 Hb_001821_010 Hb_001821_010 Hb_012725_050--Hb_001821_010 Hb_028227_020 Hb_028227_020 Hb_012725_050--Hb_028227_020 Hb_002214_040 Hb_002214_040 Hb_012725_050--Hb_002214_040 Hb_000331_080 Hb_000331_080 Hb_012725_050--Hb_000331_080 Hb_000059_370 Hb_000059_370 Hb_001105_030--Hb_000059_370 Hb_001105_030--Hb_001821_010 Hb_001105_030--Hb_001157_020 Hb_000580_090 Hb_000580_090 Hb_001105_030--Hb_000580_090 Hb_000815_320 Hb_000815_320 Hb_001105_030--Hb_000815_320 Hb_001157_020--Hb_028227_020 Hb_001157_020--Hb_001821_010 Hb_001140_370 Hb_001140_370 Hb_001157_020--Hb_001140_370 Hb_001157_020--Hb_000815_320 Hb_001821_010--Hb_000815_320 Hb_000056_200 Hb_000056_200 Hb_001821_010--Hb_000056_200 Hb_002609_020 Hb_002609_020 Hb_001821_010--Hb_002609_020 Hb_004735_040 Hb_004735_040 Hb_001821_010--Hb_004735_040 Hb_009694_010 Hb_009694_010 Hb_028227_020--Hb_009694_010 Hb_005697_060 Hb_005697_060 Hb_028227_020--Hb_005697_060 Hb_001936_080 Hb_001936_080 Hb_028227_020--Hb_001936_080 Hb_000120_790 Hb_000120_790 Hb_028227_020--Hb_000120_790 Hb_000529_190 Hb_000529_190 Hb_002214_040--Hb_000529_190 Hb_000832_140 Hb_000832_140 Hb_002214_040--Hb_000832_140 Hb_118707_030 Hb_118707_030 Hb_002214_040--Hb_118707_030 Hb_002477_070 Hb_002477_070 Hb_002214_040--Hb_002477_070 Hb_009838_080 Hb_009838_080 Hb_002214_040--Hb_009838_080 Hb_000815_040 Hb_000815_040 Hb_002214_040--Hb_000815_040 Hb_153112_020 Hb_153112_020 Hb_000331_080--Hb_153112_020 Hb_004994_100 Hb_004994_100 Hb_000331_080--Hb_004994_100 Hb_008878_030 Hb_008878_030 Hb_000331_080--Hb_008878_030 Hb_000840_030 Hb_000840_030 Hb_000331_080--Hb_000840_030 Hb_002686_020 Hb_002686_020 Hb_000331_080--Hb_002686_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8459 3.86007 9.74919 5.80714 13.7166 12.7872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9325 21.0477 12.8107 7.46246 8.68268

CAGE analysis