Hb_012725_070

Information

Type -
Description -
Location Contig12725: 86405-87934
Sequence    

Annotation

kegg
ID tcc:TCM_001235
description Uncharacterized protein isoform 1
nr
ID XP_012075217.1
description PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09394 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08333: 79849-85911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012725_070 0.0 - - PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]
2 Hb_000141_250 0.0759760959 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
3 Hb_005288_150 0.0764762499 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
4 Hb_006817_010 0.0790200308 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
5 Hb_000808_050 0.087584632 - - exonuclease, putative [Ricinus communis]
6 Hb_011013_010 0.0922102354 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
7 Hb_000260_100 0.0955568104 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000690_160 0.096074931 - - PREDICTED: uncharacterized protein LOC105121500 [Populus euphratica]
9 Hb_008511_130 0.0969866145 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
10 Hb_000866_010 0.1002015596 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002997_080 0.1009384142 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
12 Hb_000390_170 0.1009626709 - - PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
13 Hb_000046_040 0.1064437333 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000649_230 0.1072487019 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
15 Hb_001012_010 0.1078869362 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
16 Hb_000661_140 0.110539442 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
17 Hb_000230_560 0.1106620798 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
18 Hb_121937_010 0.1123131011 - - hypothetical protein B456_013G261900 [Gossypium raimondii]
19 Hb_002197_020 0.1155569214 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
20 Hb_000000_210 0.1156249588 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012725_070 Hb_012725_070 Hb_000141_250 Hb_000141_250 Hb_012725_070--Hb_000141_250 Hb_005288_150 Hb_005288_150 Hb_012725_070--Hb_005288_150 Hb_006817_010 Hb_006817_010 Hb_012725_070--Hb_006817_010 Hb_000808_050 Hb_000808_050 Hb_012725_070--Hb_000808_050 Hb_011013_010 Hb_011013_010 Hb_012725_070--Hb_011013_010 Hb_000260_100 Hb_000260_100 Hb_012725_070--Hb_000260_100 Hb_008511_130 Hb_008511_130 Hb_000141_250--Hb_008511_130 Hb_000230_560 Hb_000230_560 Hb_000141_250--Hb_000230_560 Hb_000141_250--Hb_005288_150 Hb_002997_080 Hb_002997_080 Hb_000141_250--Hb_002997_080 Hb_000390_170 Hb_000390_170 Hb_000141_250--Hb_000390_170 Hb_002197_020 Hb_002197_020 Hb_000141_250--Hb_002197_020 Hb_005288_150--Hb_000260_100 Hb_020367_050 Hb_020367_050 Hb_005288_150--Hb_020367_050 Hb_005288_150--Hb_002997_080 Hb_002639_150 Hb_002639_150 Hb_005288_150--Hb_002639_150 Hb_001329_130 Hb_001329_130 Hb_005288_150--Hb_001329_130 Hb_000866_010 Hb_000866_010 Hb_006817_010--Hb_000866_010 Hb_006817_010--Hb_000808_050 Hb_006817_010--Hb_000390_170 Hb_000690_160 Hb_000690_160 Hb_006817_010--Hb_000690_160 Hb_000053_110 Hb_000053_110 Hb_006817_010--Hb_000053_110 Hb_000808_050--Hb_000141_250 Hb_002542_020 Hb_002542_020 Hb_000808_050--Hb_002542_020 Hb_000808_050--Hb_008511_130 Hb_000599_180 Hb_000599_180 Hb_000808_050--Hb_000599_180 Hb_001472_060 Hb_001472_060 Hb_000808_050--Hb_001472_060 Hb_000661_140 Hb_000661_140 Hb_011013_010--Hb_000661_140 Hb_011013_010--Hb_002639_150 Hb_011013_010--Hb_005288_150 Hb_001373_110 Hb_001373_110 Hb_011013_010--Hb_001373_110 Hb_004531_070 Hb_004531_070 Hb_011013_010--Hb_004531_070 Hb_000260_100--Hb_002997_080 Hb_000236_240 Hb_000236_240 Hb_000260_100--Hb_000236_240 Hb_000260_100--Hb_001329_130 Hb_000260_100--Hb_000230_560 Hb_007007_060 Hb_007007_060 Hb_000260_100--Hb_007007_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.72 4.48816 19.1978 8.03975 9.91401 13.0004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.411 9.86431 11.4209 4.36478 7.64957

CAGE analysis