Hb_012725_110

Information

Type -
Description -
Location Contig12725: 113912-114431
Sequence    

Annotation

kegg
ID pop:POPTR_0005s08600g
description hypothetical protein
nr
ID KDP35238.1
description hypothetical protein JCGZ_09397 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09397 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08335: 113852-114631 , PASA_asmbl_08336: 113852-114621
cDNA
(Sanger)
(ID:Location)		 002_M13.ab1: 114040-114621 , 008_I21.ab1: 114039-114502 , 013_O17.ab1: 114040-114621 , 018_M24.ab1: 114028-114623 , 026_G05.ab1: 114039-114554 , 031_O21.ab1: 114040-114621 , 038_K05.ab1: 114040-114631

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012725_110 0.0 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
2 Hb_004206_030 0.0871943757 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
3 Hb_002387_060 0.0976360582 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002685_090 0.1008879227 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
5 Hb_000041_070 0.1074468005 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
6 Hb_000836_500 0.108128051 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
7 Hb_002291_030 0.1097871414 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
8 Hb_042729_010 0.1144322617 - - -
9 Hb_002000_110 0.1156372116 - - ASR-like protein 2 [Hevea brasiliensis]
10 Hb_002936_050 0.1156547784 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
11 Hb_000178_110 0.1156563215 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012522_030 0.1174187635 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_000419_040 0.11785708 - - chorismate synthase [Hevea brasiliensis]
14 Hb_002928_110 0.12070746 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
15 Hb_060668_010 0.1250567817 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
16 Hb_009265_060 0.1272978631 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
17 Hb_000270_410 0.1292717016 - - -
18 Hb_000085_300 0.1335751895 - - -
19 Hb_000003_840 0.135120463 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
20 Hb_015934_020 0.1360337787 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]

Gene co-expression network

sample Hb_012725_110 Hb_012725_110 Hb_004206_030 Hb_004206_030 Hb_012725_110--Hb_004206_030 Hb_002387_060 Hb_002387_060 Hb_012725_110--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_012725_110--Hb_002685_090 Hb_000041_070 Hb_000041_070 Hb_012725_110--Hb_000041_070 Hb_000836_500 Hb_000836_500 Hb_012725_110--Hb_000836_500 Hb_002291_030 Hb_002291_030 Hb_012725_110--Hb_002291_030 Hb_060668_010 Hb_060668_010 Hb_004206_030--Hb_060668_010 Hb_004206_030--Hb_000041_070 Hb_042729_010 Hb_042729_010 Hb_004206_030--Hb_042729_010 Hb_003106_140 Hb_003106_140 Hb_004206_030--Hb_003106_140 Hb_004206_030--Hb_002387_060 Hb_012522_030 Hb_012522_030 Hb_002387_060--Hb_012522_030 Hb_015934_020 Hb_015934_020 Hb_002387_060--Hb_015934_020 Hb_000085_300 Hb_000085_300 Hb_002387_060--Hb_000085_300 Hb_183963_020 Hb_183963_020 Hb_002387_060--Hb_183963_020 Hb_000032_220 Hb_000032_220 Hb_002387_060--Hb_000032_220 Hb_002387_060--Hb_002291_030 Hb_000270_410 Hb_000270_410 Hb_002685_090--Hb_000270_410 Hb_002685_090--Hb_000041_070 Hb_002685_090--Hb_015934_020 Hb_002685_090--Hb_002387_060 Hb_002936_050 Hb_002936_050 Hb_002685_090--Hb_002936_050 Hb_001741_080 Hb_001741_080 Hb_000041_070--Hb_001741_080 Hb_001514_180 Hb_001514_180 Hb_000041_070--Hb_001514_180 Hb_000041_070--Hb_060668_010 Hb_000041_070--Hb_002387_060 Hb_000178_110 Hb_000178_110 Hb_000836_500--Hb_000178_110 Hb_000836_500--Hb_002291_030 Hb_002928_110 Hb_002928_110 Hb_000836_500--Hb_002928_110 Hb_029584_140 Hb_029584_140 Hb_000836_500--Hb_029584_140 Hb_000836_500--Hb_002936_050 Hb_002291_030--Hb_002928_110 Hb_002291_030--Hb_012522_030 Hb_002326_030 Hb_002326_030 Hb_002291_030--Hb_002326_030 Hb_001478_050 Hb_001478_050 Hb_002291_030--Hb_001478_050 Hb_092706_020 Hb_092706_020 Hb_002291_030--Hb_092706_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
282.461 7.34013 8.17013 15.7638 95.7462 121.51
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
392.814 264.643 410.245 55.5944 2.00822

CAGE analysis