Hb_012733_080

Information

Type -
Description -
Location Contig12733: 99507-108393
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012733_080 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_006183_010 0.0008022466 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_080147_010 0.0019447379 - - -
4 Hb_011362_030 0.0084455502 - - polyprotein [Oryza australiensis]
5 Hb_078466_020 0.0342614179 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
6 Hb_002800_040 0.0476598537 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_004162_110 0.048040631 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
8 Hb_000243_100 0.0480705036 - - Purple acid phosphatase precursor, putative [Ricinus communis]
9 Hb_002871_200 0.0606005029 - - -
10 Hb_003581_040 0.0616676634 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
11 Hb_022348_020 0.0637736128 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_000078_040 0.0831219802 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]
13 Hb_012815_020 0.0970889346 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_007139_010 0.0978172879 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
15 Hb_019859_030 0.0981048166 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
16 Hb_001854_010 0.0986645014 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_124976_010 0.1051766058 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_004410_060 0.125288793 - - -
19 Hb_007545_160 0.1608088679 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
20 Hb_000486_050 0.1893447029 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_012733_080 Hb_012733_080 Hb_006183_010 Hb_006183_010 Hb_012733_080--Hb_006183_010 Hb_080147_010 Hb_080147_010 Hb_012733_080--Hb_080147_010 Hb_011362_030 Hb_011362_030 Hb_012733_080--Hb_011362_030 Hb_078466_020 Hb_078466_020 Hb_012733_080--Hb_078466_020 Hb_002800_040 Hb_002800_040 Hb_012733_080--Hb_002800_040 Hb_004162_110 Hb_004162_110 Hb_012733_080--Hb_004162_110 Hb_006183_010--Hb_080147_010 Hb_006183_010--Hb_011362_030 Hb_006183_010--Hb_078466_020 Hb_006183_010--Hb_002800_040 Hb_006183_010--Hb_004162_110 Hb_080147_010--Hb_011362_030 Hb_080147_010--Hb_078466_020 Hb_080147_010--Hb_002800_040 Hb_080147_010--Hb_004162_110 Hb_011362_030--Hb_002800_040 Hb_011362_030--Hb_004162_110 Hb_000243_100 Hb_000243_100 Hb_011362_030--Hb_000243_100 Hb_002871_200 Hb_002871_200 Hb_078466_020--Hb_002871_200 Hb_003581_040 Hb_003581_040 Hb_078466_020--Hb_003581_040 Hb_022348_020 Hb_022348_020 Hb_078466_020--Hb_022348_020 Hb_002800_040--Hb_004162_110 Hb_002800_040--Hb_000243_100 Hb_004162_110--Hb_000243_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00356787 0 0 0 0.00394214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis