Hb_012753_010

Information

Type -
Description -
Location Contig12753: 59-1648
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012753_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_000054_110 0.161974053 - - PREDICTED: uncharacterized protein LOC105350810 [Fragaria vesca subsp. vesca]
3 Hb_005511_090 0.2116038582 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 C isoform X1 [Jatropha curcas]
4 Hb_185058_020 0.216415298 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
5 Hb_001188_120 0.2262973821 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
6 Hb_005731_150 0.237304732 - - PREDICTED: uncharacterized protein LOC105630360 [Jatropha curcas]
7 Hb_021854_020 0.2378624182 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
8 Hb_001096_020 0.2507544791 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Populus euphratica]
9 Hb_014324_010 0.2572386418 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
10 Hb_003197_060 0.2649615287 - - hypothetical protein POPTR_0015s11900g [Populus trichocarpa]
11 Hb_001085_210 0.2673707381 - - PREDICTED: myosin-binding protein 3 [Jatropha curcas]
12 Hb_007037_010 0.2685077152 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
13 Hb_003097_050 0.2728582958 - - hypothetical protein POPTR_0007s07150g [Populus trichocarpa]
14 Hb_142570_010 0.2785518577 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
15 Hb_005214_080 0.2833507401 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001001_110 0.2913602572 - - -
17 Hb_085083_020 0.2948676652 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
18 Hb_010490_060 0.29544652 - - PREDICTED: uncharacterized protein LOC105767021 [Gossypium raimondii]
19 Hb_001780_130 0.2965567601 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
20 Hb_041813_050 0.2993799649 - - hypothetical protein NitaMp096 [Nicotiana tabacum]

Gene co-expression network

sample Hb_012753_010 Hb_012753_010 Hb_000054_110 Hb_000054_110 Hb_012753_010--Hb_000054_110 Hb_005511_090 Hb_005511_090 Hb_012753_010--Hb_005511_090 Hb_185058_020 Hb_185058_020 Hb_012753_010--Hb_185058_020 Hb_001188_120 Hb_001188_120 Hb_012753_010--Hb_001188_120 Hb_005731_150 Hb_005731_150 Hb_012753_010--Hb_005731_150 Hb_021854_020 Hb_021854_020 Hb_012753_010--Hb_021854_020 Hb_003097_050 Hb_003097_050 Hb_000054_110--Hb_003097_050 Hb_005214_080 Hb_005214_080 Hb_000054_110--Hb_005214_080 Hb_001780_130 Hb_001780_130 Hb_000054_110--Hb_001780_130 Hb_000054_110--Hb_005731_150 Hb_001096_020 Hb_001096_020 Hb_000054_110--Hb_001096_020 Hb_000608_200 Hb_000608_200 Hb_005511_090--Hb_000608_200 Hb_015978_050 Hb_015978_050 Hb_005511_090--Hb_015978_050 Hb_005511_090--Hb_000054_110 Hb_005511_090--Hb_005731_150 Hb_000236_450 Hb_000236_450 Hb_005511_090--Hb_000236_450 Hb_009848_050 Hb_009848_050 Hb_185058_020--Hb_009848_050 Hb_001085_210 Hb_001085_210 Hb_185058_020--Hb_001085_210 Hb_007037_010 Hb_007037_010 Hb_185058_020--Hb_007037_010 Hb_041813_050 Hb_041813_050 Hb_185058_020--Hb_041813_050 Hb_009848_060 Hb_009848_060 Hb_185058_020--Hb_009848_060 Hb_069147_010 Hb_069147_010 Hb_185058_020--Hb_069147_010 Hb_003186_040 Hb_003186_040 Hb_001188_120--Hb_003186_040 Hb_002791_020 Hb_002791_020 Hb_001188_120--Hb_002791_020 Hb_085083_020 Hb_085083_020 Hb_001188_120--Hb_085083_020 Hb_076795_010 Hb_076795_010 Hb_001188_120--Hb_076795_010 Hb_001188_120--Hb_185058_020 Hb_005731_150--Hb_005214_080 Hb_000649_180 Hb_000649_180 Hb_005731_150--Hb_000649_180 Hb_005731_150--Hb_003097_050 Hb_005731_150--Hb_001780_130 Hb_021854_010 Hb_021854_010 Hb_021854_020--Hb_021854_010 Hb_113119_010 Hb_113119_010 Hb_021854_020--Hb_113119_010 Hb_001310_050 Hb_001310_050 Hb_021854_020--Hb_001310_050 Hb_010068_050 Hb_010068_050 Hb_021854_020--Hb_010068_050 Hb_006594_080 Hb_006594_080 Hb_021854_020--Hb_006594_080 Hb_008033_060 Hb_008033_060 Hb_021854_020--Hb_008033_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0142821 0.0271098 0.0141343 0.0322337 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0575559 0.0865971 0.128078

CAGE analysis