Hb_012753_040

Information

Type -
Description -
Location Contig12753: 20001-21886
Sequence    

Annotation

kegg
ID pop:POPTR_0003s12190g
description POPTRDRAFT_1073989; F-box family protein
nr
ID XP_012086994.1
description PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
swissprot
ID Q9LN77
description F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1
trembl
ID A0A067K125
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08379: 20973-21192
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012753_040 0.0 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
2 Hb_000015_160 0.111209999 - - Heat shock cognate 70 kDa protein 1 [Triticum urartu]
3 Hb_009674_080 0.1162282263 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
4 Hb_000991_050 0.1189340973 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
5 Hb_002774_150 0.1230255175 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
6 Hb_000922_220 0.1270965882 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
7 Hb_003120_070 0.1346259993 - - ATP binding protein, putative [Ricinus communis]
8 Hb_006573_010 0.1453389371 - - heat shock protein [Hevea brasiliensis]
9 Hb_005736_050 0.1467623416 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
10 Hb_012038_010 0.1517497556 - - phospholipid-transporting atpase, putative [Ricinus communis]
11 Hb_000127_190 0.1519549297 - - PREDICTED: protein GIGANTEA [Jatropha curcas]
12 Hb_004324_060 0.1534211808 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
13 Hb_004994_300 0.1540659678 - - synaptotagmin, putative [Ricinus communis]
14 Hb_002387_070 0.1569706787 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
15 Hb_000631_140 0.1572272211 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
16 Hb_044653_020 0.1576818654 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
17 Hb_002918_320 0.1604319268 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
18 Hb_002485_040 0.161019348 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
19 Hb_000896_060 0.1616317734 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000526_060 0.1635663952 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]

Gene co-expression network

sample Hb_012753_040 Hb_012753_040 Hb_000015_160 Hb_000015_160 Hb_012753_040--Hb_000015_160 Hb_009674_080 Hb_009674_080 Hb_012753_040--Hb_009674_080 Hb_000991_050 Hb_000991_050 Hb_012753_040--Hb_000991_050 Hb_002774_150 Hb_002774_150 Hb_012753_040--Hb_002774_150 Hb_000922_220 Hb_000922_220 Hb_012753_040--Hb_000922_220 Hb_003120_070 Hb_003120_070 Hb_012753_040--Hb_003120_070 Hb_000015_160--Hb_000991_050 Hb_002387_070 Hb_002387_070 Hb_000015_160--Hb_002387_070 Hb_000015_160--Hb_002774_150 Hb_000015_160--Hb_009674_080 Hb_000631_140 Hb_000631_140 Hb_000015_160--Hb_000631_140 Hb_012038_010 Hb_012038_010 Hb_009674_080--Hb_012038_010 Hb_000526_060 Hb_000526_060 Hb_009674_080--Hb_000526_060 Hb_009674_080--Hb_003120_070 Hb_000117_070 Hb_000117_070 Hb_009674_080--Hb_000117_070 Hb_120470_010 Hb_120470_010 Hb_009674_080--Hb_120470_010 Hb_000991_050--Hb_002774_150 Hb_000991_050--Hb_009674_080 Hb_004324_060 Hb_004324_060 Hb_000991_050--Hb_004324_060 Hb_000139_180 Hb_000139_180 Hb_000991_050--Hb_000139_180 Hb_002774_150--Hb_004324_060 Hb_002485_040 Hb_002485_040 Hb_002774_150--Hb_002485_040 Hb_002774_150--Hb_012038_010 Hb_172421_010 Hb_172421_010 Hb_002774_150--Hb_172421_010 Hb_004994_300 Hb_004994_300 Hb_002774_150--Hb_004994_300 Hb_004875_010 Hb_004875_010 Hb_000922_220--Hb_004875_010 Hb_122273_020 Hb_122273_020 Hb_000922_220--Hb_122273_020 Hb_002804_030 Hb_002804_030 Hb_000922_220--Hb_002804_030 Hb_000434_010 Hb_000434_010 Hb_000922_220--Hb_000434_010 Hb_002918_320 Hb_002918_320 Hb_000922_220--Hb_002918_320 Hb_000922_220--Hb_172421_010 Hb_014720_020 Hb_014720_020 Hb_003120_070--Hb_014720_020 Hb_002005_120 Hb_002005_120 Hb_003120_070--Hb_002005_120 Hb_000751_140 Hb_000751_140 Hb_003120_070--Hb_000751_140 Hb_003120_070--Hb_000526_060 Hb_003120_070--Hb_000117_070 Hb_000197_290 Hb_000197_290 Hb_003120_070--Hb_000197_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.44645 19.4268 3.54052 4.73698 7.90114 4.19186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.52836 0.939146 1.38712 3.01801 10.0238

CAGE analysis