Hb_012753_130

Information

Type -
Description -
Location Contig12753: 63452-67054
Sequence    

Annotation

kegg
ID rcu:RCOM_0664340
description hypothetical protein
nr
ID XP_002533313.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LPN7
description E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1
trembl
ID B9T4Z4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0664340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08382: 67128-67551
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012753_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002961_060 0.1309032303 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 [Populus euphratica]
3 Hb_000413_010 0.1410811953 - - hypothetical protein JCGZ_21316 [Jatropha curcas]
4 Hb_000227_240 0.1471791217 - - hypothetical protein JCGZ_02139 [Jatropha curcas]
5 Hb_011794_040 0.1536917054 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Populus euphratica]
6 Hb_001481_120 0.1554324875 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
7 Hb_000032_620 0.1585265456 - - hypothetical protein RCOM_1311830 [Ricinus communis]
8 Hb_000261_180 0.1593283565 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
9 Hb_000599_140 0.1618547132 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Populus euphratica]
10 Hb_005288_200 0.1668329614 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
11 Hb_074715_010 0.1716946667 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
12 Hb_000179_130 0.1722387275 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
13 Hb_001205_070 0.1750327576 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
14 Hb_000343_160 0.1775984107 - - PREDICTED: protein SYS1 homolog [Jatropha curcas]
15 Hb_000003_220 0.1796417377 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
16 Hb_004143_040 0.1798359219 - - argininosuccinate lyase, putative [Ricinus communis]
17 Hb_003211_010 0.1841810316 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
18 Hb_003376_360 0.1857757012 - - PREDICTED: ubiquitin-like protein 5 [Nelumbo nucifera]
19 Hb_001655_070 0.1858388378 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
20 Hb_005048_130 0.1867978982 - - hypothetical protein POPTR_0004s03700g [Populus trichocarpa]

Gene co-expression network

sample Hb_012753_130 Hb_012753_130 Hb_002961_060 Hb_002961_060 Hb_012753_130--Hb_002961_060 Hb_000413_010 Hb_000413_010 Hb_012753_130--Hb_000413_010 Hb_000227_240 Hb_000227_240 Hb_012753_130--Hb_000227_240 Hb_011794_040 Hb_011794_040 Hb_012753_130--Hb_011794_040 Hb_001481_120 Hb_001481_120 Hb_012753_130--Hb_001481_120 Hb_000032_620 Hb_000032_620 Hb_012753_130--Hb_000032_620 Hb_170487_020 Hb_170487_020 Hb_002961_060--Hb_170487_020 Hb_074715_010 Hb_074715_010 Hb_002961_060--Hb_074715_010 Hb_005048_130 Hb_005048_130 Hb_002961_060--Hb_005048_130 Hb_004143_040 Hb_004143_040 Hb_002961_060--Hb_004143_040 Hb_009564_030 Hb_009564_030 Hb_002961_060--Hb_009564_030 Hb_002961_060--Hb_000227_240 Hb_000413_010--Hb_001481_120 Hb_001205_070 Hb_001205_070 Hb_000413_010--Hb_001205_070 Hb_001178_140 Hb_001178_140 Hb_000413_010--Hb_001178_140 Hb_000859_060 Hb_000859_060 Hb_000413_010--Hb_000859_060 Hb_001277_270 Hb_001277_270 Hb_000413_010--Hb_001277_270 Hb_001892_020 Hb_001892_020 Hb_000413_010--Hb_001892_020 Hb_093084_060 Hb_093084_060 Hb_000227_240--Hb_093084_060 Hb_004785_060 Hb_004785_060 Hb_000227_240--Hb_004785_060 Hb_002400_310 Hb_002400_310 Hb_000227_240--Hb_002400_310 Hb_000179_130 Hb_000179_130 Hb_000227_240--Hb_000179_130 Hb_000260_270 Hb_000260_270 Hb_000227_240--Hb_000260_270 Hb_004545_140 Hb_004545_140 Hb_000227_240--Hb_004545_140 Hb_011794_040--Hb_002961_060 Hb_000441_150 Hb_000441_150 Hb_011794_040--Hb_000441_150 Hb_167234_010 Hb_167234_010 Hb_011794_040--Hb_167234_010 Hb_006588_150 Hb_006588_150 Hb_011794_040--Hb_006588_150 Hb_001369_440 Hb_001369_440 Hb_011794_040--Hb_001369_440 Hb_000000_460 Hb_000000_460 Hb_001481_120--Hb_000000_460 Hb_000005_080 Hb_000005_080 Hb_001481_120--Hb_000005_080 Hb_005054_290 Hb_005054_290 Hb_001481_120--Hb_005054_290 Hb_001277_320 Hb_001277_320 Hb_001481_120--Hb_001277_320 Hb_001481_120--Hb_001205_070 Hb_086063_010 Hb_086063_010 Hb_000032_620--Hb_086063_010 Hb_000798_060 Hb_000798_060 Hb_000032_620--Hb_000798_060 Hb_001220_030 Hb_001220_030 Hb_000032_620--Hb_001220_030 Hb_001610_110 Hb_001610_110 Hb_000032_620--Hb_001610_110 Hb_005928_110 Hb_005928_110 Hb_000032_620--Hb_005928_110 Hb_164010_060 Hb_164010_060 Hb_000032_620--Hb_164010_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.74671 2.0233 0.173408 1.78215 0.937711 1.46306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.46933 1.20563 1.27688 1.25889 0

CAGE analysis