Hb_012753_140

Information

Type -
Description -
Location Contig12753: 65811-67430
Sequence    

Annotation

kegg
ID rcu:RCOM_1684370
description (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative (EC:1.14.13.71)
nr
ID XP_002509713.1
description (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
swissprot
ID O64899
description (S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (Fragment) OS=Eschscholzia californica GN=CYP80B1 PE=2 SV=1
trembl
ID B9RC29
description (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative OS=Ricinus communis GN=RCOM_1684370 PE=3 SV=1
Gene Ontology
ID GO:0005506
description probable -n-methylcoclaurine 3 -hydroxylase isozyme 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08381: 65920-66221
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012753_140 0.0 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
2 Hb_031822_020 0.1110663191 - - PREDICTED: uncharacterized protein LOC104613080 [Nelumbo nucifera]
3 Hb_137821_010 0.119244224 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
4 Hb_003906_040 0.1230475086 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like [Tarenaya hassleriana]
5 Hb_000629_140 0.1243448959 - - hypothetical protein SORBIDRAFT_04g013083 [Sorghum bicolor]
6 Hb_178343_010 0.1262127452 - - PREDICTED: two-component response regulator ARR17-like [Jatropha curcas]
7 Hb_005694_140 0.1265922801 - - protein with unknown function [Ricinus communis]
8 Hb_116486_010 0.1282428451 - - MADS-box transcription factor, partial [Sapria himalayana]
9 Hb_000048_120 0.130288204 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
10 Hb_125152_010 0.130736235 - - Ankyrin repeat family protein, putative [Theobroma cacao]
11 Hb_002105_070 0.1348333245 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000527_090 0.1367342414 - - serine carboxypeptidase, putative [Ricinus communis]
13 Hb_007472_060 0.1388224437 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
14 Hb_005463_120 0.139751841 - - gibberellin 20-oxidase, putative [Ricinus communis]
15 Hb_002820_100 0.1400231833 - - hypothetical protein OsI_33031 [Oryza sativa Indica Group]
16 Hb_002853_010 0.1402990502 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007441_320 0.1416192334 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
18 Hb_001804_020 0.1428476322 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
19 Hb_003747_080 0.1441181411 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
20 Hb_009501_010 0.1479243305 - - Disease resistance protein RPS5, putative [Ricinus communis]

Gene co-expression network

sample Hb_012753_140 Hb_012753_140 Hb_031822_020 Hb_031822_020 Hb_012753_140--Hb_031822_020 Hb_137821_010 Hb_137821_010 Hb_012753_140--Hb_137821_010 Hb_003906_040 Hb_003906_040 Hb_012753_140--Hb_003906_040 Hb_000629_140 Hb_000629_140 Hb_012753_140--Hb_000629_140 Hb_178343_010 Hb_178343_010 Hb_012753_140--Hb_178343_010 Hb_005694_140 Hb_005694_140 Hb_012753_140--Hb_005694_140 Hb_001804_020 Hb_001804_020 Hb_031822_020--Hb_001804_020 Hb_002701_200 Hb_002701_200 Hb_031822_020--Hb_002701_200 Hb_007441_320 Hb_007441_320 Hb_031822_020--Hb_007441_320 Hb_120496_010 Hb_120496_010 Hb_031822_020--Hb_120496_010 Hb_000224_070 Hb_000224_070 Hb_031822_020--Hb_000224_070 Hb_003747_080 Hb_003747_080 Hb_137821_010--Hb_003747_080 Hb_005463_120 Hb_005463_120 Hb_137821_010--Hb_005463_120 Hb_000527_090 Hb_000527_090 Hb_137821_010--Hb_000527_090 Hb_000048_120 Hb_000048_120 Hb_137821_010--Hb_000048_120 Hb_125152_010 Hb_125152_010 Hb_137821_010--Hb_125152_010 Hb_137821_010--Hb_000629_140 Hb_003906_040--Hb_178343_010 Hb_109187_010 Hb_109187_010 Hb_003906_040--Hb_109187_010 Hb_000589_080 Hb_000589_080 Hb_003906_040--Hb_000589_080 Hb_003906_040--Hb_005694_140 Hb_116486_010 Hb_116486_010 Hb_003906_040--Hb_116486_010 Hb_000629_140--Hb_000048_120 Hb_000629_140--Hb_125152_010 Hb_000629_140--Hb_005694_140 Hb_000629_140--Hb_116486_010 Hb_009501_010 Hb_009501_010 Hb_000629_140--Hb_009501_010 Hb_178343_010--Hb_120496_010 Hb_017524_020 Hb_017524_020 Hb_178343_010--Hb_017524_020 Hb_001277_390 Hb_001277_390 Hb_178343_010--Hb_001277_390 Hb_118941_010 Hb_118941_010 Hb_178343_010--Hb_118941_010 Hb_005694_140--Hb_116486_010 Hb_002105_070 Hb_002105_070 Hb_005694_140--Hb_002105_070 Hb_005694_140--Hb_000048_120 Hb_005694_140--Hb_125152_010 Hb_000027_020 Hb_000027_020 Hb_005694_140--Hb_000027_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0553382 0.203996 0.010863 4.24209 0.0138619 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0465741 0.00989906 0

CAGE analysis