Hb_012753_160

Information

Type -
Description -
Location Contig12753: 73136-78383
Sequence    

Annotation

kegg
ID rcu:RCOM_1684390
description ara4-interacting protein, putative
nr
ID XP_002509715.1
description ara4-interacting protein, putative [Ricinus communis]
swissprot
ID F4JPR7
description Plant UBX domain-containing protein 8 OS=Arabidopsis thaliana GN=PUX8 PE=1 SV=1
trembl
ID B9RC31
description Ara4-interacting protein, putative OS=Ricinus communis GN=RCOM_1684390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08385: 73213-76327 , PASA_asmbl_08386: 76424-78088
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012753_160 0.0 - - ara4-interacting protein, putative [Ricinus communis]
2 Hb_012675_060 0.0495980979 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
3 Hb_001140_060 0.0614973788 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
4 Hb_000072_080 0.0620838002 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
5 Hb_001998_050 0.0640188904 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
6 Hb_003455_040 0.0643267643 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
7 Hb_000574_480 0.0663673572 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
8 Hb_000173_220 0.0684858293 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
9 Hb_000230_510 0.0715837787 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
10 Hb_017948_010 0.0721670796 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
11 Hb_000329_310 0.0724926572 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
12 Hb_006117_070 0.0727562787 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
13 Hb_004586_320 0.0732123063 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
14 Hb_002918_200 0.0756304463 - - -
15 Hb_001141_030 0.0763003031 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
16 Hb_021409_030 0.0765481144 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
17 Hb_001085_120 0.0768952077 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
18 Hb_003994_040 0.0776701652 - - -
19 Hb_001083_020 0.078156232 - - -
20 Hb_000240_090 0.0785381061 - - Rab5 [Hevea brasiliensis]

Gene co-expression network

sample Hb_012753_160 Hb_012753_160 Hb_012675_060 Hb_012675_060 Hb_012753_160--Hb_012675_060 Hb_001140_060 Hb_001140_060 Hb_012753_160--Hb_001140_060 Hb_000072_080 Hb_000072_080 Hb_012753_160--Hb_000072_080 Hb_001998_050 Hb_001998_050 Hb_012753_160--Hb_001998_050 Hb_003455_040 Hb_003455_040 Hb_012753_160--Hb_003455_040 Hb_000574_480 Hb_000574_480 Hb_012753_160--Hb_000574_480 Hb_010080_090 Hb_010080_090 Hb_012675_060--Hb_010080_090 Hb_000834_270 Hb_000834_270 Hb_012675_060--Hb_000834_270 Hb_004586_320 Hb_004586_320 Hb_012675_060--Hb_004586_320 Hb_012675_060--Hb_000574_480 Hb_000173_220 Hb_000173_220 Hb_012675_060--Hb_000173_220 Hb_006117_070 Hb_006117_070 Hb_001140_060--Hb_006117_070 Hb_008300_010 Hb_008300_010 Hb_001140_060--Hb_008300_010 Hb_000479_010 Hb_000479_010 Hb_001140_060--Hb_000479_010 Hb_101705_030 Hb_101705_030 Hb_001140_060--Hb_101705_030 Hb_008878_030 Hb_008878_030 Hb_001140_060--Hb_008878_030 Hb_002235_280 Hb_002235_280 Hb_000072_080--Hb_002235_280 Hb_138585_060 Hb_138585_060 Hb_000072_080--Hb_138585_060 Hb_021409_030 Hb_021409_030 Hb_000072_080--Hb_021409_030 Hb_001143_080 Hb_001143_080 Hb_000072_080--Hb_001143_080 Hb_000120_680 Hb_000120_680 Hb_000072_080--Hb_000120_680 Hb_000227_230 Hb_000227_230 Hb_001998_050--Hb_000227_230 Hb_001998_050--Hb_000574_480 Hb_002925_030 Hb_002925_030 Hb_001998_050--Hb_002925_030 Hb_001998_050--Hb_004586_320 Hb_001998_050--Hb_012675_060 Hb_003376_030 Hb_003376_030 Hb_003455_040--Hb_003376_030 Hb_003994_040 Hb_003994_040 Hb_003455_040--Hb_003994_040 Hb_003455_040--Hb_000173_220 Hb_002027_210 Hb_002027_210 Hb_003455_040--Hb_002027_210 Hb_002097_060 Hb_002097_060 Hb_003455_040--Hb_002097_060 Hb_003656_070 Hb_003656_070 Hb_000574_480--Hb_003656_070 Hb_002963_010 Hb_002963_010 Hb_000574_480--Hb_002963_010 Hb_008173_090 Hb_008173_090 Hb_000574_480--Hb_008173_090 Hb_000574_480--Hb_000173_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.0895 12.4336 14.4071 17.6099 29.1928 32.301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.5163 82.8183 58.0013 22.9423 18.2897

CAGE analysis