Hb_012753_170

Information

Type -
Description -
Location Contig12753: 78742-86481
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08870g
description POPTRDRAFT_1067002; hypothetical protein
nr
ID XP_012086990.1
description PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
swissprot
ID Q8CHJ1
description Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Rattus norvegicus GN=Pigu PE=1 SV=3
trembl
ID A0A067K119
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20655 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08387: 83395-84216 , PASA_asmbl_08388: 85475-85687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012753_170 0.0 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
2 Hb_008103_070 0.0610395978 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
3 Hb_001821_160 0.0637866842 - - serine/arginine rich splicing factor, putative [Ricinus communis]
4 Hb_004785_100 0.0664273418 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006960_050 0.0726268323 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
6 Hb_001433_070 0.0734349196 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
7 Hb_002175_030 0.0754290709 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
8 Hb_010068_040 0.0755954373 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
9 Hb_005588_090 0.076528615 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
10 Hb_000334_270 0.0767546528 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
11 Hb_000649_070 0.0777780166 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
12 Hb_032202_120 0.078431839 - - PREDICTED: uncharacterized protein LOC105643059 isoform X2 [Jatropha curcas]
13 Hb_002835_230 0.078623149 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
14 Hb_079526_030 0.0800339276 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
15 Hb_000160_350 0.0802960624 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
16 Hb_000487_210 0.0815166306 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
17 Hb_000576_020 0.0821191347 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
18 Hb_027760_080 0.0836927335 - - cytochrome P450, putative [Ricinus communis]
19 Hb_131646_010 0.0863378688 - - protein arginine n-methyltransferase, putative [Ricinus communis]
20 Hb_000174_110 0.0865484483 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]

Gene co-expression network

sample Hb_012753_170 Hb_012753_170 Hb_008103_070 Hb_008103_070 Hb_012753_170--Hb_008103_070 Hb_001821_160 Hb_001821_160 Hb_012753_170--Hb_001821_160 Hb_004785_100 Hb_004785_100 Hb_012753_170--Hb_004785_100 Hb_006960_050 Hb_006960_050 Hb_012753_170--Hb_006960_050 Hb_001433_070 Hb_001433_070 Hb_012753_170--Hb_001433_070 Hb_002175_030 Hb_002175_030 Hb_012753_170--Hb_002175_030 Hb_002890_120 Hb_002890_120 Hb_008103_070--Hb_002890_120 Hb_008103_070--Hb_001433_070 Hb_005588_090 Hb_005588_090 Hb_008103_070--Hb_005588_090 Hb_008103_070--Hb_002175_030 Hb_032202_120 Hb_032202_120 Hb_008103_070--Hb_032202_120 Hb_001821_160--Hb_004785_100 Hb_000331_110 Hb_000331_110 Hb_001821_160--Hb_000331_110 Hb_079526_030 Hb_079526_030 Hb_001821_160--Hb_079526_030 Hb_001821_160--Hb_005588_090 Hb_022256_060 Hb_022256_060 Hb_001821_160--Hb_022256_060 Hb_131646_010 Hb_131646_010 Hb_004785_100--Hb_131646_010 Hb_002835_230 Hb_002835_230 Hb_004785_100--Hb_002835_230 Hb_002686_250 Hb_002686_250 Hb_004785_100--Hb_002686_250 Hb_004785_100--Hb_006960_050 Hb_002078_110 Hb_002078_110 Hb_004785_100--Hb_002078_110 Hb_000649_070 Hb_000649_070 Hb_006960_050--Hb_000649_070 Hb_004055_150 Hb_004055_150 Hb_006960_050--Hb_004055_150 Hb_006620_020 Hb_006620_020 Hb_006960_050--Hb_006620_020 Hb_020367_050 Hb_020367_050 Hb_006960_050--Hb_020367_050 Hb_006960_050--Hb_002686_250 Hb_001433_070--Hb_079526_030 Hb_001089_110 Hb_001089_110 Hb_001433_070--Hb_001089_110 Hb_001433_070--Hb_002175_030 Hb_002110_230 Hb_002110_230 Hb_001433_070--Hb_002110_230 Hb_003878_110 Hb_003878_110 Hb_001433_070--Hb_003878_110 Hb_183612_040 Hb_183612_040 Hb_001433_070--Hb_183612_040 Hb_156973_010 Hb_156973_010 Hb_002175_030--Hb_156973_010 Hb_000853_230 Hb_000853_230 Hb_002175_030--Hb_000853_230 Hb_002175_030--Hb_001089_110 Hb_010068_040 Hb_010068_040 Hb_002175_030--Hb_010068_040 Hb_002175_030--Hb_006620_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.81444 3.10325 3.22382 2.26088 4.54529 2.78416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.8 3.0888 1.21566 2.56065 2.00555

CAGE analysis