Hb_012753_210

Information

Type -
Description -
Location Contig12753: 112020-115472
Sequence    

Annotation

kegg
ID pop:POPTR_0003s12310g
description POPTRDRAFT_830825; rhomboid family protein
nr
ID XP_012086985.1
description PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
swissprot
ID Q6GMF8
description Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1
trembl
ID A0A067K115
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20650 PE=4 SV=1
Gene Ontology
ID GO:0016021
description inactive rhomboid protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08391: 111949-115376
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012753_210 0.0 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
2 Hb_001582_020 0.0998660171 - - plastid acyl-ACP thioesterase [Vernicia fordii]
3 Hb_000787_080 0.114282798 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
4 Hb_033152_090 0.1181409284 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
5 Hb_002249_020 0.1208234264 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
6 Hb_000815_310 0.1232499089 - - protein kinase, putative [Ricinus communis]
7 Hb_000045_160 0.1253946792 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
8 Hb_000640_190 0.1266785375 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
9 Hb_000631_090 0.1295528326 - - PREDICTED: uncharacterized protein LOC105640619 [Jatropha curcas]
10 Hb_011930_100 0.1318288873 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
11 Hb_001009_120 0.1329461143 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
12 Hb_012286_020 0.1331559645 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
13 Hb_004725_030 0.1332451291 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
14 Hb_000042_110 0.1347539513 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
15 Hb_002615_070 0.1348937064 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
16 Hb_003449_100 0.1354700199 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
17 Hb_000260_490 0.1359166719 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
18 Hb_088584_010 0.1371787232 - - hypothetical protein POPTR_0016s08470g [Populus trichocarpa]
19 Hb_012787_030 0.1379038226 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
20 Hb_007919_110 0.13804538 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_012753_210 Hb_012753_210 Hb_001582_020 Hb_001582_020 Hb_012753_210--Hb_001582_020 Hb_000787_080 Hb_000787_080 Hb_012753_210--Hb_000787_080 Hb_033152_090 Hb_033152_090 Hb_012753_210--Hb_033152_090 Hb_002249_020 Hb_002249_020 Hb_012753_210--Hb_002249_020 Hb_000815_310 Hb_000815_310 Hb_012753_210--Hb_000815_310 Hb_000045_160 Hb_000045_160 Hb_012753_210--Hb_000045_160 Hb_001582_020--Hb_002249_020 Hb_001582_020--Hb_033152_090 Hb_001582_020--Hb_000787_080 Hb_000258_420 Hb_000258_420 Hb_001582_020--Hb_000258_420 Hb_006846_170 Hb_006846_170 Hb_001582_020--Hb_006846_170 Hb_001766_070 Hb_001766_070 Hb_000787_080--Hb_001766_070 Hb_000003_680 Hb_000003_680 Hb_000787_080--Hb_000003_680 Hb_000787_080--Hb_000258_420 Hb_000787_080--Hb_000815_310 Hb_000787_080--Hb_033152_090 Hb_000137_010 Hb_000137_010 Hb_000787_080--Hb_000137_010 Hb_000640_190 Hb_000640_190 Hb_033152_090--Hb_000640_190 Hb_033152_090--Hb_000258_420 Hb_001009_120 Hb_001009_120 Hb_033152_090--Hb_001009_120 Hb_000956_040 Hb_000956_040 Hb_033152_090--Hb_000956_040 Hb_033152_090--Hb_000815_310 Hb_003777_130 Hb_003777_130 Hb_033152_090--Hb_003777_130 Hb_002249_020--Hb_006846_170 Hb_002249_020--Hb_000640_190 Hb_003449_100 Hb_003449_100 Hb_002249_020--Hb_003449_100 Hb_003925_060 Hb_003925_060 Hb_002249_020--Hb_003925_060 Hb_006022_010 Hb_006022_010 Hb_002249_020--Hb_006022_010 Hb_003228_100 Hb_003228_100 Hb_002249_020--Hb_003228_100 Hb_003540_250 Hb_003540_250 Hb_000815_310--Hb_003540_250 Hb_000815_310--Hb_003777_130 Hb_002965_050 Hb_002965_050 Hb_000815_310--Hb_002965_050 Hb_007416_260 Hb_007416_260 Hb_000815_310--Hb_007416_260 Hb_002876_210 Hb_002876_210 Hb_000815_310--Hb_002876_210 Hb_000045_160--Hb_000640_190 Hb_011930_100 Hb_011930_100 Hb_000045_160--Hb_011930_100 Hb_000045_160--Hb_033152_090 Hb_088584_010 Hb_088584_010 Hb_000045_160--Hb_088584_010 Hb_000045_160--Hb_002249_020 Hb_000045_160--Hb_000815_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5627 58.0309 86.076 59.8107 15.2325 28.3581
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8551 11.3355 18.7169 8.53533 29.6781

CAGE analysis