Hb_012754_020

Information

Type -
Description -
Location Contig12754: 25662-27853
Sequence    

Annotation

kegg
ID tcc:TCM_032818
description hypothetical protein
nr
ID XP_009780861.1
description PREDICTED: uncharacterized protein LOC104229837 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A061FAL1
description Uncharacterized protein OS=Theobroma cacao GN=TCM_032818 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012754_020 0.0 - - PREDICTED: uncharacterized protein LOC104229837 [Nicotiana sylvestris]
2 Hb_000985_070 0.1617101354 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
3 Hb_003185_090 0.2020277393 - - Boron transporter, putative [Ricinus communis]
4 Hb_000302_210 0.2101931931 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001493_160 0.2189028118 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
6 Hb_164162_010 0.2195531145 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
7 Hb_000125_220 0.2458548563 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 13 [Jatropha curcas]
8 Hb_001699_120 0.2521759567 - - Protein P21, putative [Ricinus communis]
9 Hb_021576_120 0.25819638 - - DNA-directed RNA polymerase subunit, putative [Ricinus communis]
10 Hb_002477_100 0.2604686663 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
11 Hb_006472_070 0.264664703 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
12 Hb_002597_020 0.266818342 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
13 Hb_068576_010 0.2710733789 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
14 Hb_001016_140 0.274279166 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
15 Hb_012092_100 0.2749918006 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000302_090 0.2800075524 - - PREDICTED: protein SGT1 homolog [Prunus mume]
17 Hb_003992_230 0.2840841859 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
18 Hb_001623_090 0.2896749107 - - PREDICTED: probable serine incorporator [Jatropha curcas]
19 Hb_000010_300 0.2941720172 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
20 Hb_023278_030 0.2944415268 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_012754_020 Hb_012754_020 Hb_000985_070 Hb_000985_070 Hb_012754_020--Hb_000985_070 Hb_003185_090 Hb_003185_090 Hb_012754_020--Hb_003185_090 Hb_000302_210 Hb_000302_210 Hb_012754_020--Hb_000302_210 Hb_001493_160 Hb_001493_160 Hb_012754_020--Hb_001493_160 Hb_164162_010 Hb_164162_010 Hb_012754_020--Hb_164162_010 Hb_000125_220 Hb_000125_220 Hb_012754_020--Hb_000125_220 Hb_000985_070--Hb_164162_010 Hb_000985_070--Hb_000302_210 Hb_000985_070--Hb_000125_220 Hb_014068_020 Hb_014068_020 Hb_000985_070--Hb_014068_020 Hb_098785_010 Hb_098785_010 Hb_000985_070--Hb_098785_010 Hb_001623_090 Hb_001623_090 Hb_003185_090--Hb_001623_090 Hb_000227_370 Hb_000227_370 Hb_003185_090--Hb_000227_370 Hb_001022_050 Hb_001022_050 Hb_003185_090--Hb_001022_050 Hb_000914_130 Hb_000914_130 Hb_003185_090--Hb_000914_130 Hb_004162_010 Hb_004162_010 Hb_003185_090--Hb_004162_010 Hb_000302_210--Hb_098785_010 Hb_000302_210--Hb_000125_220 Hb_003799_020 Hb_003799_020 Hb_000302_210--Hb_003799_020 Hb_000925_040 Hb_000925_040 Hb_000302_210--Hb_000925_040 Hb_072997_010 Hb_072997_010 Hb_001493_160--Hb_072997_010 Hb_001416_170 Hb_001416_170 Hb_001493_160--Hb_001416_170 Hb_055147_020 Hb_055147_020 Hb_001493_160--Hb_055147_020 Hb_004096_010 Hb_004096_010 Hb_001493_160--Hb_004096_010 Hb_183086_070 Hb_183086_070 Hb_001493_160--Hb_183086_070 Hb_002045_260 Hb_002045_260 Hb_164162_010--Hb_002045_260 Hb_006478_140 Hb_006478_140 Hb_164162_010--Hb_006478_140 Hb_003751_100 Hb_003751_100 Hb_164162_010--Hb_003751_100 Hb_002374_360 Hb_002374_360 Hb_164162_010--Hb_002374_360 Hb_000085_390 Hb_000085_390 Hb_000125_220--Hb_000085_390 Hb_000125_220--Hb_098785_010 Hb_012092_100 Hb_012092_100 Hb_000125_220--Hb_012092_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.123981 0.229523 0.0999858 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.118682 0.163298 0

CAGE analysis