Hb_012760_020

Information

Type -
Description -
Location Contig12760: 2351-6389
Sequence    

Annotation

kegg
ID tcc:TCM_000131
description Translocon at inner membrane of chloroplasts 21, putative isoform 2
nr
ID XP_012088456.1
description PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJ00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25339 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08412: 1868-2577
cDNA
(Sanger)
(ID:Location)		 020_L17.ab1: 1948-2547 , 026_N02.ab1: 1868-2566

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012760_020 0.0 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
2 Hb_012522_010 0.1931386348 - - hypothetical protein VITISV_003261 [Vitis vinifera]
3 Hb_000108_170 0.2451314823 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
4 Hb_000980_070 0.2498577231 - - PREDICTED: uncharacterized protein LOC103440883 [Malus domestica]
5 Hb_163837_010 0.2681595165 - - PREDICTED: putative F-box protein At1g65770 [Eucalyptus grandis]
6 Hb_000304_060 0.2691224179 transcription factor TF Family: GRAS hypothetical protein POPTR_0010s15360g [Populus trichocarpa]
7 Hb_000000_100 0.2762661382 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
8 Hb_008494_050 0.2783312521 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
9 Hb_000733_210 0.2863204741 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
10 Hb_004103_030 0.2885836475 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000334_180 0.2985244546 - - hypothetical protein JCGZ_16779 [Jatropha curcas]
12 Hb_005539_170 0.3070684509 - - PREDICTED: uncharacterized protein LOC101502180 [Cicer arietinum]
13 Hb_010029_020 0.3091352623 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
14 Hb_002374_430 0.3136565617 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000049_090 0.3144833054 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
16 Hb_002700_080 0.3194738252 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_24521 [Jatropha curcas]
17 Hb_000940_160 0.3198614115 - - hypothetical protein VITISV_017596 [Vitis vinifera]
18 Hb_005699_080 0.3214066903 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
19 Hb_000579_050 0.3226931587 - - PREDICTED: peroxidase 9 [Jatropha curcas]
20 Hb_002131_040 0.3238465633 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_012760_020 Hb_012760_020 Hb_012522_010 Hb_012522_010 Hb_012760_020--Hb_012522_010 Hb_000108_170 Hb_000108_170 Hb_012760_020--Hb_000108_170 Hb_000980_070 Hb_000980_070 Hb_012760_020--Hb_000980_070 Hb_163837_010 Hb_163837_010 Hb_012760_020--Hb_163837_010 Hb_000304_060 Hb_000304_060 Hb_012760_020--Hb_000304_060 Hb_000000_100 Hb_000000_100 Hb_012760_020--Hb_000000_100 Hb_012522_010--Hb_163837_010 Hb_012522_010--Hb_000304_060 Hb_004103_030 Hb_004103_030 Hb_012522_010--Hb_004103_030 Hb_001124_040 Hb_001124_040 Hb_012522_010--Hb_001124_040 Hb_012522_010--Hb_000000_100 Hb_007676_020 Hb_007676_020 Hb_000108_170--Hb_007676_020 Hb_011512_130 Hb_011512_130 Hb_000108_170--Hb_011512_130 Hb_005841_080 Hb_005841_080 Hb_000108_170--Hb_005841_080 Hb_008066_070 Hb_008066_070 Hb_000108_170--Hb_008066_070 Hb_000733_210 Hb_000733_210 Hb_000108_170--Hb_000733_210 Hb_008494_050 Hb_008494_050 Hb_000980_070--Hb_008494_050 Hb_000980_070--Hb_000000_100 Hb_000980_070--Hb_000108_170 Hb_000554_030 Hb_000554_030 Hb_000980_070--Hb_000554_030 Hb_000980_070--Hb_000304_060 Hb_161072_010 Hb_161072_010 Hb_163837_010--Hb_161072_010 Hb_163837_010--Hb_000304_060 Hb_000045_150 Hb_000045_150 Hb_163837_010--Hb_000045_150 Hb_000637_120 Hb_000637_120 Hb_163837_010--Hb_000637_120 Hb_000304_060--Hb_000000_100 Hb_000512_070 Hb_000512_070 Hb_000304_060--Hb_000512_070 Hb_000251_090 Hb_000251_090 Hb_000304_060--Hb_000251_090 Hb_000000_100--Hb_004103_030 Hb_001976_080 Hb_001976_080 Hb_000000_100--Hb_001976_080 Hb_000000_100--Hb_008494_050 Hb_008511_010 Hb_008511_010 Hb_000000_100--Hb_008511_010 Hb_000000_100--Hb_000251_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0504285 0.318948 0.115792 0.0529571 0.152406 0.0902092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.31801 0.419587 0

CAGE analysis