Hb_012760_060

Information

Type -
Description -
Location Contig12760: 32201-35479
Sequence    

Annotation

kegg
ID rcu:RCOM_0782580
description hypothetical protein
nr
ID XP_012088462.1
description PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SXB0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0782580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012760_060 0.0 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
2 Hb_000506_130 0.1529987679 - - DGCR14-related family protein [Populus trichocarpa]
3 Hb_052113_020 0.1546149614 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
4 Hb_000431_030 0.1568409914 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
5 Hb_017434_020 0.1571262918 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
6 Hb_024357_010 0.1581552015 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
7 Hb_115158_010 0.1621578787 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_183539_010 0.1719604254 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
9 Hb_002239_030 0.1749530107 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
10 Hb_111881_030 0.1754669015 - - PREDICTED: uncharacterized protein LOC105645255 [Jatropha curcas]
11 Hb_000336_190 0.178119828 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
12 Hb_000087_180 0.1795847623 - - conserved hypothetical protein [Ricinus communis]
13 Hb_019516_050 0.1833951216 - - hypothetical protein JCGZ_04619 [Jatropha curcas]
14 Hb_004143_050 0.1852056123 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
15 Hb_133508_010 0.1859998345 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
16 Hb_093177_010 0.18631301 - - Phosphoprotein phosphatase [Theobroma cacao]
17 Hb_187697_010 0.1877657626 - - TMV resistance protein N, putative [Ricinus communis]
18 Hb_001791_010 0.1882254657 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g63710 [Jatropha curcas]
19 Hb_001608_030 0.1882664877 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
20 Hb_005183_010 0.1886428988 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]

Gene co-expression network

sample Hb_012760_060 Hb_012760_060 Hb_000506_130 Hb_000506_130 Hb_012760_060--Hb_000506_130 Hb_052113_020 Hb_052113_020 Hb_012760_060--Hb_052113_020 Hb_000431_030 Hb_000431_030 Hb_012760_060--Hb_000431_030 Hb_017434_020 Hb_017434_020 Hb_012760_060--Hb_017434_020 Hb_024357_010 Hb_024357_010 Hb_012760_060--Hb_024357_010 Hb_115158_010 Hb_115158_010 Hb_012760_060--Hb_115158_010 Hb_000245_270 Hb_000245_270 Hb_000506_130--Hb_000245_270 Hb_000506_140 Hb_000506_140 Hb_000506_130--Hb_000506_140 Hb_000506_130--Hb_052113_020 Hb_000506_130--Hb_017434_020 Hb_029238_020 Hb_029238_020 Hb_000506_130--Hb_029238_020 Hb_004143_050 Hb_004143_050 Hb_000506_130--Hb_004143_050 Hb_052113_020--Hb_000245_270 Hb_002042_190 Hb_002042_190 Hb_052113_020--Hb_002042_190 Hb_003800_010 Hb_003800_010 Hb_052113_020--Hb_003800_010 Hb_052113_020--Hb_029238_020 Hb_052113_020--Hb_004143_050 Hb_002248_090 Hb_002248_090 Hb_000431_030--Hb_002248_090 Hb_003371_260 Hb_003371_260 Hb_000431_030--Hb_003371_260 Hb_002239_030 Hb_002239_030 Hb_000431_030--Hb_002239_030 Hb_024857_010 Hb_024857_010 Hb_000431_030--Hb_024857_010 Hb_000101_140 Hb_000101_140 Hb_000431_030--Hb_000101_140 Hb_000087_180 Hb_000087_180 Hb_017434_020--Hb_000087_180 Hb_183539_010 Hb_183539_010 Hb_017434_020--Hb_183539_010 Hb_017434_020--Hb_000506_140 Hb_005183_010 Hb_005183_010 Hb_017434_020--Hb_005183_010 Hb_004607_180 Hb_004607_180 Hb_017434_020--Hb_004607_180 Hb_001897_030 Hb_001897_030 Hb_024357_010--Hb_001897_030 Hb_005389_090 Hb_005389_090 Hb_024357_010--Hb_005389_090 Hb_024357_010--Hb_002239_030 Hb_132517_010 Hb_132517_010 Hb_024357_010--Hb_132517_010 Hb_133508_010 Hb_133508_010 Hb_024357_010--Hb_133508_010 Hb_000723_060 Hb_000723_060 Hb_024357_010--Hb_000723_060 Hb_093177_010 Hb_093177_010 Hb_115158_010--Hb_093177_010 Hb_001608_030 Hb_001608_030 Hb_115158_010--Hb_001608_030 Hb_007137_030 Hb_007137_030 Hb_115158_010--Hb_007137_030 Hb_004106_010 Hb_004106_010 Hb_115158_010--Hb_004106_010 Hb_000236_120 Hb_000236_120 Hb_115158_010--Hb_000236_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.125524 1.98002 0.169465 1.0983 0.0820599 0.0466254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0304788 0.0579974 0.23011 0.0969845

CAGE analysis