Hb_012760_090

Information

Type -
Description -
Location Contig12760: 54121-62526
Sequence    

Annotation

kegg
ID rcu:RCOM_0311060
description Aspartic proteinase nepenthesin-2 precursor, putative
nr
ID XP_010113297.1
description Aspartic proteinase-like protein 1 [Morus notabilis]
swissprot
ID Q9LX20
description Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1
trembl
ID W9SCT8
description Aspartic proteinase-like protein 1 OS=Morus notabilis GN=L484_026627 PE=3 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08418: 54154-57638 , PASA_asmbl_08419: 58392-58674 , PASA_asmbl_08420: 59943-60319 , PASA_asmbl_08421: 60444-61877 , PASA_asmbl_08423: 61928-62325
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012760_090 0.0 - - Aspartic proteinase-like protein 1 [Morus notabilis]
2 Hb_002641_160 0.0806764296 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010050_020 0.0834425122 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
4 Hb_005333_080 0.0879115956 - - conserved hypothetical protein [Ricinus communis]
5 Hb_034507_060 0.0920348498 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
6 Hb_004218_130 0.1083477161 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
7 Hb_000318_170 0.1095902139 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
8 Hb_000309_030 0.1102602159 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
9 Hb_001221_390 0.1116278283 - - Phospholipase C 4 precursor, putative [Ricinus communis]
10 Hb_000000_480 0.113216377 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
11 Hb_004522_030 0.1144761449 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
12 Hb_000116_240 0.1149690194 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
13 Hb_010672_050 0.1157047422 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
14 Hb_001545_130 0.1160705933 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
15 Hb_005694_180 0.1200994013 - - PREDICTED: cytochrome b5 [Jatropha curcas]
16 Hb_001754_050 0.1224201303 - - protein arginine n-methyltransferase, putative [Ricinus communis]
17 Hb_003710_020 0.1245583236 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
18 Hb_143766_080 0.1258184405 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
19 Hb_000622_330 0.1259977105 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
20 Hb_003430_080 0.1262986064 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_012760_090 Hb_012760_090 Hb_002641_160 Hb_002641_160 Hb_012760_090--Hb_002641_160 Hb_010050_020 Hb_010050_020 Hb_012760_090--Hb_010050_020 Hb_005333_080 Hb_005333_080 Hb_012760_090--Hb_005333_080 Hb_034507_060 Hb_034507_060 Hb_012760_090--Hb_034507_060 Hb_004218_130 Hb_004218_130 Hb_012760_090--Hb_004218_130 Hb_000318_170 Hb_000318_170 Hb_012760_090--Hb_000318_170 Hb_002641_160--Hb_010050_020 Hb_002641_160--Hb_004218_130 Hb_001545_130 Hb_001545_130 Hb_002641_160--Hb_001545_130 Hb_000309_030 Hb_000309_030 Hb_002641_160--Hb_000309_030 Hb_000000_480 Hb_000000_480 Hb_002641_160--Hb_000000_480 Hb_001221_390 Hb_001221_390 Hb_010050_020--Hb_001221_390 Hb_000622_330 Hb_000622_330 Hb_010050_020--Hb_000622_330 Hb_004522_030 Hb_004522_030 Hb_010050_020--Hb_004522_030 Hb_000012_400 Hb_000012_400 Hb_010050_020--Hb_000012_400 Hb_010672_050 Hb_010672_050 Hb_005333_080--Hb_010672_050 Hb_158092_040 Hb_158092_040 Hb_005333_080--Hb_158092_040 Hb_008695_150 Hb_008695_150 Hb_005333_080--Hb_008695_150 Hb_000116_240 Hb_000116_240 Hb_005333_080--Hb_000116_240 Hb_001019_160 Hb_001019_160 Hb_005333_080--Hb_001019_160 Hb_023226_030 Hb_023226_030 Hb_034507_060--Hb_023226_030 Hb_005694_180 Hb_005694_180 Hb_034507_060--Hb_005694_180 Hb_003710_020 Hb_003710_020 Hb_034507_060--Hb_003710_020 Hb_034507_060--Hb_004218_130 Hb_034507_060--Hb_010050_020 Hb_000098_180 Hb_000098_180 Hb_004218_130--Hb_000098_180 Hb_004218_130--Hb_001545_130 Hb_018845_010 Hb_018845_010 Hb_004218_130--Hb_018845_010 Hb_003929_180 Hb_003929_180 Hb_004218_130--Hb_003929_180 Hb_004218_130--Hb_000000_480 Hb_002739_120 Hb_002739_120 Hb_004218_130--Hb_002739_120 Hb_005485_070 Hb_005485_070 Hb_000318_170--Hb_005485_070 Hb_000791_050 Hb_000791_050 Hb_000318_170--Hb_000791_050 Hb_000318_170--Hb_000309_030 Hb_000318_170--Hb_000116_240 Hb_000731_210 Hb_000731_210 Hb_000318_170--Hb_000731_210 Hb_007575_030 Hb_007575_030 Hb_000318_170--Hb_007575_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.471357 3.17899 5.97867 8.37206 0.562592 0.566655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.542028 0.33727 0.741582 4.09278 3.30916

CAGE analysis