Hb_012760_170

Information

Type -
Description -
Location Contig12760: 98399-106493
Sequence    

Annotation

kegg
ID pmum:103340396
description la-related protein 1C-like
nr
ID XP_012088476.1
description PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
swissprot
ID Q94K80
description La-related protein 1C OS=Arabidopsis thaliana GN=LARP1C PE=1 SV=1
trembl
ID A0A067JVE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25358 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08433: 98493-105983
cDNA
(Sanger)
(ID:Location)		 014_N21.ab1: 98496-99175 , 023_E13.ab1: 98496-99109 , 026_G12.ab1: 98495-99115

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012760_170 0.0 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
2 Hb_003602_040 0.0642292064 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
3 Hb_006663_100 0.0784893445 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
4 Hb_022137_060 0.0799287885 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
5 Hb_000184_110 0.0847569613 - - hypothetical protein F383_18769 [Gossypium arboreum]
6 Hb_000120_800 0.0852428376 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
7 Hb_001017_040 0.0867073914 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
8 Hb_002014_080 0.0879922097 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
9 Hb_000012_090 0.0892697787 - - 3'-5' exonuclease, putative [Ricinus communis]
10 Hb_010866_040 0.0920737114 - - PREDICTED: metal transporter Nramp2-like [Jatropha curcas]
11 Hb_000120_500 0.0938401709 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
12 Hb_076787_010 0.0945706611 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
13 Hb_014568_030 0.0954935467 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
14 Hb_000009_170 0.0958770108 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
15 Hb_028639_060 0.0968279878 - - transporter, putative [Ricinus communis]
16 Hb_000077_050 0.0972847893 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_000370_030 0.0973037994 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
18 Hb_004452_100 0.0978258706 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
19 Hb_005662_030 0.0983702023 - - protein with unknown function [Ricinus communis]
20 Hb_003728_020 0.0984553959 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012760_170 Hb_012760_170 Hb_003602_040 Hb_003602_040 Hb_012760_170--Hb_003602_040 Hb_006663_100 Hb_006663_100 Hb_012760_170--Hb_006663_100 Hb_022137_060 Hb_022137_060 Hb_012760_170--Hb_022137_060 Hb_000184_110 Hb_000184_110 Hb_012760_170--Hb_000184_110 Hb_000120_800 Hb_000120_800 Hb_012760_170--Hb_000120_800 Hb_001017_040 Hb_001017_040 Hb_012760_170--Hb_001017_040 Hb_009118_010 Hb_009118_010 Hb_003602_040--Hb_009118_010 Hb_000012_090 Hb_000012_090 Hb_003602_040--Hb_000012_090 Hb_028639_060 Hb_028639_060 Hb_003602_040--Hb_028639_060 Hb_000120_500 Hb_000120_500 Hb_003602_040--Hb_000120_500 Hb_003602_040--Hb_006663_100 Hb_006663_100--Hb_022137_060 Hb_007894_140 Hb_007894_140 Hb_006663_100--Hb_007894_140 Hb_007590_080 Hb_007590_080 Hb_006663_100--Hb_007590_080 Hb_001329_230 Hb_001329_230 Hb_006663_100--Hb_001329_230 Hb_010120_030 Hb_010120_030 Hb_022137_060--Hb_010120_030 Hb_022137_060--Hb_000120_800 Hb_000359_170 Hb_000359_170 Hb_022137_060--Hb_000359_170 Hb_000009_170 Hb_000009_170 Hb_022137_060--Hb_000009_170 Hb_000184_110--Hb_001017_040 Hb_005396_130 Hb_005396_130 Hb_000184_110--Hb_005396_130 Hb_004452_100 Hb_004452_100 Hb_000184_110--Hb_004452_100 Hb_000729_050 Hb_000729_050 Hb_000184_110--Hb_000729_050 Hb_005662_030 Hb_005662_030 Hb_000184_110--Hb_005662_030 Hb_108216_040 Hb_108216_040 Hb_000184_110--Hb_108216_040 Hb_001840_080 Hb_001840_080 Hb_000120_800--Hb_001840_080 Hb_005306_110 Hb_005306_110 Hb_000120_800--Hb_005306_110 Hb_000120_800--Hb_001017_040 Hb_000134_090 Hb_000134_090 Hb_000120_800--Hb_000134_090 Hb_000120_800--Hb_000009_170 Hb_001017_040--Hb_005662_030 Hb_000179_020 Hb_000179_020 Hb_001017_040--Hb_000179_020 Hb_001017_040--Hb_005396_130 Hb_002039_010 Hb_002039_010 Hb_001017_040--Hb_002039_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.2927 9.73246 5.56889 12.911 43.8537 51.7671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.1868 21.1532 31.8013 19.5195 13.683

CAGE analysis