Hb_012760_200

Information

Type -
Description -
Location Contig12760: 137862-144452
Sequence    

Annotation

kegg
ID rcu:RCOM_0041080
description protein phsophatase-2a, putative (EC:3.1.3.16)
nr
ID XP_002531165.1
description protein phsophatase-2a, putative [Ricinus communis]
swissprot
ID P48578
description Serine/threonine-protein phosphatase PP2A-3 catalytic subunit OS=Arabidopsis thaliana GN=PP2A3 PE=2 SV=1
trembl
ID B9SYU6
description Serine/threonine-protein phosphatase OS=Ricinus communis GN=RCOM_0041080 PE=3 SV=1
Gene Ontology
ID GO:0016787
description serine threonine-protein phosphatase pp2a-3 catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08439: 137783-144491 , PASA_asmbl_08441: 143083-143249 , PASA_asmbl_08442: 142795-143042 , PASA_asmbl_08444: 139214-139572
cDNA
(Sanger)
(ID:Location)		 022_J13.ab1: 138923-144491 , 029_E19.ab1: 140010-144468

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012760_200 0.0 - - protein phsophatase-2a, putative [Ricinus communis]
2 Hb_005028_010 0.0607327421 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
3 Hb_004032_350 0.0714352745 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
4 Hb_001034_020 0.0729190945 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
5 Hb_013753_010 0.0730800867 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
6 Hb_000212_280 0.0760432073 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
7 Hb_000331_480 0.0779618795 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
8 Hb_000640_210 0.0784132592 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
9 Hb_025048_040 0.0784825213 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
10 Hb_000890_220 0.080450483 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
11 Hb_000573_040 0.0829653274 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
12 Hb_002374_150 0.0843077647 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
13 Hb_002025_140 0.0851712848 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
14 Hb_060437_010 0.0870220204 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
15 Hb_113216_010 0.0877262471 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
16 Hb_000779_040 0.0879604816 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
17 Hb_004531_090 0.0898809487 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
18 Hb_000076_290 0.0902092118 - - translation factor sui1, putative [Ricinus communis]
19 Hb_000211_090 0.0908682052 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
20 Hb_101151_020 0.0908829848 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_012760_200 Hb_012760_200 Hb_005028_010 Hb_005028_010 Hb_012760_200--Hb_005028_010 Hb_004032_350 Hb_004032_350 Hb_012760_200--Hb_004032_350 Hb_001034_020 Hb_001034_020 Hb_012760_200--Hb_001034_020 Hb_013753_010 Hb_013753_010 Hb_012760_200--Hb_013753_010 Hb_000212_280 Hb_000212_280 Hb_012760_200--Hb_000212_280 Hb_000331_480 Hb_000331_480 Hb_012760_200--Hb_000331_480 Hb_005028_010--Hb_000212_280 Hb_000640_210 Hb_000640_210 Hb_005028_010--Hb_000640_210 Hb_000573_040 Hb_000573_040 Hb_005028_010--Hb_000573_040 Hb_025048_040 Hb_025048_040 Hb_005028_010--Hb_025048_040 Hb_001140_080 Hb_001140_080 Hb_005028_010--Hb_001140_080 Hb_000076_290 Hb_000076_290 Hb_004032_350--Hb_000076_290 Hb_000152_890 Hb_000152_890 Hb_004032_350--Hb_000152_890 Hb_000367_290 Hb_000367_290 Hb_004032_350--Hb_000367_290 Hb_004032_350--Hb_013753_010 Hb_004032_350--Hb_001034_020 Hb_060437_010 Hb_060437_010 Hb_001034_020--Hb_060437_010 Hb_001034_020--Hb_000331_480 Hb_001439_180 Hb_001439_180 Hb_001034_020--Hb_001439_180 Hb_002675_190 Hb_002675_190 Hb_001034_020--Hb_002675_190 Hb_000890_220 Hb_000890_220 Hb_013753_010--Hb_000890_220 Hb_101151_020 Hb_101151_020 Hb_013753_010--Hb_101151_020 Hb_013753_010--Hb_000331_480 Hb_013753_010--Hb_025048_040 Hb_000212_280--Hb_025048_040 Hb_113216_010 Hb_113216_010 Hb_000212_280--Hb_113216_010 Hb_002374_150 Hb_002374_150 Hb_000212_280--Hb_002374_150 Hb_000212_280--Hb_000331_480 Hb_005000_270 Hb_005000_270 Hb_000212_280--Hb_005000_270 Hb_000331_480--Hb_025048_040 Hb_000331_480--Hb_002675_190 Hb_153547_010 Hb_153547_010 Hb_000331_480--Hb_153547_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1327.25 526.105 102.751 99.1486 1266.96 1380.81
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
457.954 134.524 318.815 200.374 63.3005

CAGE analysis