Hb_012762_060

Information

Type -
Description -
Location Contig12762: 36433-37794
Sequence    

Annotation

kegg
ID rcu:RCOM_0843160
description Vitellogenic carboxypeptidase, putative (EC:3.4.16.6)
nr
ID XP_002526021.1
description Vitellogenic carboxypeptidase, putative [Ricinus communis]
swissprot
ID Q9M9Q6
description Serine carboxypeptidase-like 50 OS=Arabidopsis thaliana GN=SCPL50 PE=2 SV=1
trembl
ID B9SJ52
description Carboxypeptidase OS=Ricinus communis GN=RCOM_0843160 PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 50

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08452: 36406-37969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012762_060 0.0 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
2 Hb_003680_030 0.0770278671 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
3 Hb_002217_320 0.0863131044 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
4 Hb_006829_070 0.0914275005 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
5 Hb_002488_010 0.1023492861 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
6 Hb_002026_020 0.1160173817 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
7 Hb_000134_120 0.1161396491 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
8 Hb_000968_060 0.1172776741 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
9 Hb_011828_010 0.1238198927 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
10 Hb_000638_060 0.1280899308 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
11 Hb_000997_070 0.1308013989 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
12 Hb_000959_300 0.1336392191 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
13 Hb_000562_100 0.1357450627 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
14 Hb_029584_120 0.1371715992 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
15 Hb_012807_150 0.1380307126 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
16 Hb_001754_060 0.1385624976 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
17 Hb_003964_080 0.1390715171 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
18 Hb_003849_120 0.1394793195 - - PREDICTED: uncharacterized protein LOC100264440 [Vitis vinifera]
19 Hb_020586_010 0.1396186884 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
20 Hb_002217_080 0.1396704559 - - PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]

Gene co-expression network

sample Hb_012762_060 Hb_012762_060 Hb_003680_030 Hb_003680_030 Hb_012762_060--Hb_003680_030 Hb_002217_320 Hb_002217_320 Hb_012762_060--Hb_002217_320 Hb_006829_070 Hb_006829_070 Hb_012762_060--Hb_006829_070 Hb_002488_010 Hb_002488_010 Hb_012762_060--Hb_002488_010 Hb_002026_020 Hb_002026_020 Hb_012762_060--Hb_002026_020 Hb_000134_120 Hb_000134_120 Hb_012762_060--Hb_000134_120 Hb_003680_030--Hb_002217_320 Hb_012807_150 Hb_012807_150 Hb_003680_030--Hb_012807_150 Hb_003680_030--Hb_006829_070 Hb_003680_030--Hb_002488_010 Hb_000959_300 Hb_000959_300 Hb_003680_030--Hb_000959_300 Hb_000638_060 Hb_000638_060 Hb_002217_320--Hb_000638_060 Hb_001847_050 Hb_001847_050 Hb_002217_320--Hb_001847_050 Hb_003964_080 Hb_003964_080 Hb_002217_320--Hb_003964_080 Hb_002217_320--Hb_006829_070 Hb_006829_070--Hb_002026_020 Hb_000424_030 Hb_000424_030 Hb_006829_070--Hb_000424_030 Hb_006925_050 Hb_006925_050 Hb_006829_070--Hb_006925_050 Hb_000968_060 Hb_000968_060 Hb_002488_010--Hb_000968_060 Hb_002488_010--Hb_000959_300 Hb_000866_070 Hb_000866_070 Hb_002488_010--Hb_000866_070 Hb_002900_150 Hb_002900_150 Hb_002488_010--Hb_002900_150 Hb_001328_050 Hb_001328_050 Hb_002026_020--Hb_001328_050 Hb_000030_020 Hb_000030_020 Hb_002026_020--Hb_000030_020 Hb_002026_020--Hb_002900_150 Hb_002026_020--Hb_003680_030 Hb_000258_220 Hb_000258_220 Hb_000134_120--Hb_000258_220 Hb_003209_130 Hb_003209_130 Hb_000134_120--Hb_003209_130 Hb_000134_120--Hb_003964_080 Hb_029584_120 Hb_029584_120 Hb_000134_120--Hb_029584_120 Hb_007919_110 Hb_007919_110 Hb_000134_120--Hb_007919_110 Hb_000926_340 Hb_000926_340 Hb_000134_120--Hb_000926_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.86379 7.63963 12.0252 23.9652 5.12277 3.79253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64164 0.961718 2.00546 3.28407 8.87193

CAGE analysis