Hb_012779_080

Information

Type -
Description -
Location Contig12779: 80473-86429
Sequence    

Annotation

kegg
ID rcu:RCOM_1617470
description hypothetical protein
nr
ID XP_012092979.1
description PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
swissprot
ID Q9LS39
description Carbon catabolite repressor protein 4 homolog 3 OS=Arabidopsis thaliana GN=CCR4-3 PE=2 SV=2
trembl
ID A0A067JJE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05864 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08521: 80872-86287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012779_080 0.0 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
2 Hb_005665_090 0.0518747735 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
3 Hb_000320_190 0.0546403414 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
4 Hb_001623_490 0.0583468092 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
5 Hb_002915_010 0.0652644832 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
6 Hb_010620_050 0.0677628112 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
7 Hb_009288_040 0.0762527146 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
8 Hb_000645_180 0.0765105139 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
9 Hb_002107_050 0.0790819898 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
10 Hb_001396_020 0.0791710524 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
11 Hb_000094_100 0.0796678207 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
12 Hb_160271_010 0.0797120484 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
13 Hb_003071_030 0.0843761451 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
14 Hb_003883_010 0.0859998291 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
15 Hb_002218_020 0.0880594992 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
16 Hb_000327_330 0.0894587944 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003687_080 0.0901866079 - - PREDICTED: casein kinase I-like [Jatropha curcas]
18 Hb_000482_050 0.0908167899 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
19 Hb_021596_020 0.0922677954 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
20 Hb_004837_210 0.0935010405 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]

Gene co-expression network

sample Hb_012779_080 Hb_012779_080 Hb_005665_090 Hb_005665_090 Hb_012779_080--Hb_005665_090 Hb_000320_190 Hb_000320_190 Hb_012779_080--Hb_000320_190 Hb_001623_490 Hb_001623_490 Hb_012779_080--Hb_001623_490 Hb_002915_010 Hb_002915_010 Hb_012779_080--Hb_002915_010 Hb_010620_050 Hb_010620_050 Hb_012779_080--Hb_010620_050 Hb_009288_040 Hb_009288_040 Hb_012779_080--Hb_009288_040 Hb_005665_090--Hb_009288_040 Hb_005665_090--Hb_001623_490 Hb_005665_090--Hb_000320_190 Hb_000645_180 Hb_000645_180 Hb_005665_090--Hb_000645_180 Hb_005665_090--Hb_010620_050 Hb_160271_010 Hb_160271_010 Hb_000320_190--Hb_160271_010 Hb_000320_190--Hb_002915_010 Hb_001396_020 Hb_001396_020 Hb_000320_190--Hb_001396_020 Hb_000320_190--Hb_000645_180 Hb_000327_330 Hb_000327_330 Hb_001623_490--Hb_000327_330 Hb_002026_090 Hb_002026_090 Hb_001623_490--Hb_002026_090 Hb_002218_020 Hb_002218_020 Hb_001623_490--Hb_002218_020 Hb_016448_010 Hb_016448_010 Hb_001623_490--Hb_016448_010 Hb_003883_010 Hb_003883_010 Hb_002915_010--Hb_003883_010 Hb_002107_050 Hb_002107_050 Hb_002915_010--Hb_002107_050 Hb_000094_100 Hb_000094_100 Hb_002915_010--Hb_000094_100 Hb_000680_010 Hb_000680_010 Hb_002915_010--Hb_000680_010 Hb_010620_050--Hb_002107_050 Hb_003071_030 Hb_003071_030 Hb_010620_050--Hb_003071_030 Hb_010620_050--Hb_160271_010 Hb_138585_030 Hb_138585_030 Hb_010620_050--Hb_138585_030 Hb_010620_050--Hb_009288_040 Hb_003752_090 Hb_003752_090 Hb_009288_040--Hb_003752_090 Hb_009288_040--Hb_000094_100 Hb_000465_440 Hb_000465_440 Hb_009288_040--Hb_000465_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.88549 2.37819 7.59556 3.81428 1.47845 1.57686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40001 1.26148 1.07814 1.77423 5.93261

CAGE analysis