Hb_012779_100

Information

Type -
Description -
Location Contig12779: 99158-103555
Sequence    

Annotation

kegg
ID rcu:RCOM_1617490
description hypothetical protein
nr
ID XP_002511971.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RE32
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1617490 PE=4 SV=1
Gene Ontology
ID GO:0016021
description atp-dependent helicase nuclease subunit a isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08528: 99218-103569 , PASA_asmbl_08529: 99218-103583 , PASA_asmbl_08532: 101300-101488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012779_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002301_230 0.089049825 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
3 Hb_000023_340 0.0926145023 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
4 Hb_000444_050 0.0980862841 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
5 Hb_000671_150 0.100899908 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
6 Hb_000696_310 0.1030128497 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
7 Hb_000671_090 0.1040678658 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
8 Hb_000979_230 0.1075606931 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
9 Hb_001691_210 0.1076487248 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
10 Hb_000496_060 0.107885881 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
11 Hb_007479_020 0.110325782 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
12 Hb_027402_070 0.1112876567 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
13 Hb_001109_020 0.1134457209 - - conserved hypothetical protein [Ricinus communis]
14 Hb_029866_040 0.1143403579 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
15 Hb_000503_050 0.1143445874 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Gossypium raimondii]
16 Hb_006573_220 0.1153640051 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
17 Hb_002097_060 0.1160377654 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
18 Hb_001135_080 0.1161157119 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
19 Hb_009113_050 0.1161200632 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
20 Hb_000086_070 0.1164750155 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_012779_100 Hb_012779_100 Hb_002301_230 Hb_002301_230 Hb_012779_100--Hb_002301_230 Hb_000023_340 Hb_000023_340 Hb_012779_100--Hb_000023_340 Hb_000444_050 Hb_000444_050 Hb_012779_100--Hb_000444_050 Hb_000671_150 Hb_000671_150 Hb_012779_100--Hb_000671_150 Hb_000696_310 Hb_000696_310 Hb_012779_100--Hb_000696_310 Hb_000671_090 Hb_000671_090 Hb_012779_100--Hb_000671_090 Hb_155764_010 Hb_155764_010 Hb_002301_230--Hb_155764_010 Hb_029866_020 Hb_029866_020 Hb_002301_230--Hb_029866_020 Hb_002056_060 Hb_002056_060 Hb_002301_230--Hb_002056_060 Hb_002216_040 Hb_002216_040 Hb_002301_230--Hb_002216_040 Hb_003097_210 Hb_003097_210 Hb_002301_230--Hb_003097_210 Hb_000963_180 Hb_000963_180 Hb_000023_340--Hb_000963_180 Hb_006573_220 Hb_006573_220 Hb_000023_340--Hb_006573_220 Hb_000441_190 Hb_000441_190 Hb_000023_340--Hb_000441_190 Hb_001141_030 Hb_001141_030 Hb_000023_340--Hb_001141_030 Hb_003632_010 Hb_003632_010 Hb_000023_340--Hb_003632_010 Hb_001842_040 Hb_001842_040 Hb_000023_340--Hb_001842_040 Hb_000087_020 Hb_000087_020 Hb_000444_050--Hb_000087_020 Hb_000205_270 Hb_000205_270 Hb_000444_050--Hb_000205_270 Hb_000086_070 Hb_000086_070 Hb_000444_050--Hb_000086_070 Hb_005997_010 Hb_005997_010 Hb_000444_050--Hb_005997_010 Hb_023732_070 Hb_023732_070 Hb_000444_050--Hb_023732_070 Hb_000329_310 Hb_000329_310 Hb_000444_050--Hb_000329_310 Hb_001881_020 Hb_001881_020 Hb_000671_150--Hb_001881_020 Hb_000671_150--Hb_000205_270 Hb_000193_290 Hb_000193_290 Hb_000671_150--Hb_000193_290 Hb_001109_020 Hb_001109_020 Hb_000671_150--Hb_001109_020 Hb_008289_060 Hb_008289_060 Hb_000671_150--Hb_008289_060 Hb_003018_190 Hb_003018_190 Hb_000671_150--Hb_003018_190 Hb_027073_040 Hb_027073_040 Hb_000696_310--Hb_027073_040 Hb_002759_060 Hb_002759_060 Hb_000696_310--Hb_002759_060 Hb_000696_310--Hb_155764_010 Hb_000696_310--Hb_000444_050 Hb_000270_370 Hb_000270_370 Hb_000696_310--Hb_000270_370 Hb_000260_810 Hb_000260_810 Hb_000696_310--Hb_000260_810 Hb_000009_160 Hb_000009_160 Hb_000671_090--Hb_000009_160 Hb_007479_020 Hb_007479_020 Hb_000671_090--Hb_007479_020 Hb_158467_010 Hb_158467_010 Hb_000671_090--Hb_158467_010 Hb_000979_230 Hb_000979_230 Hb_000671_090--Hb_000979_230 Hb_000671_090--Hb_000270_370 Hb_000834_270 Hb_000834_270 Hb_000671_090--Hb_000834_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.4458 8.50315 11.0068 14.5047 8.75868 29.866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.1229 49.1731 46.3196 19.2508 5.38522

CAGE analysis