Hb_012779_110

Information

Type -
Description -
Location Contig12779: 104879-108745
Sequence    

Annotation

kegg
ID fve:101292601
description uncharacterized protein LOC101292601
nr
ID XP_012093049.1
description PREDICTED: uncharacterized protein LOC105650717 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067J8Q4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05861 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08533: 105094-105423
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012779_110 0.0 - - PREDICTED: uncharacterized protein LOC105650717 [Jatropha curcas]
2 Hb_000580_160 0.1112783558 - - Nitrate transporter 1.5 [Morus notabilis]
3 Hb_002221_080 0.1129585659 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
4 Hb_000025_290 0.1151068305 - - Uncharacterized protein TCM_031320 [Theobroma cacao]
5 Hb_003023_050 0.1192819715 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
6 Hb_006469_060 0.1258042886 - - hypothetical protein POPTR_0005s16470g [Populus trichocarpa]
7 Hb_005276_100 0.1304794372 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
8 Hb_007451_030 0.1401720952 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
9 Hb_001109_120 0.1453634918 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
10 Hb_000143_050 0.1454552535 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
11 Hb_028365_010 0.145850081 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
12 Hb_005410_030 0.1497781442 - - glutaredoxin 2 [Hevea brasiliensis]
13 Hb_004055_060 0.1500125864 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
14 Hb_005615_070 0.1575218833 - - Rab7 [Hevea brasiliensis]
15 Hb_007625_020 0.1629670187 - - PREDICTED: casein kinase II subunit alpha-like [Sesamum indicum]
16 Hb_001621_180 0.1658153674 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
17 Hb_000061_160 0.1671738468 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
18 Hb_000078_030 0.1676940381 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007441_180 0.1681419004 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002235_220 0.1690176707 - - PREDICTED: pectinesterase 31-like [Jatropha curcas]

Gene co-expression network

sample Hb_012779_110 Hb_012779_110 Hb_000580_160 Hb_000580_160 Hb_012779_110--Hb_000580_160 Hb_002221_080 Hb_002221_080 Hb_012779_110--Hb_002221_080 Hb_000025_290 Hb_000025_290 Hb_012779_110--Hb_000025_290 Hb_003023_050 Hb_003023_050 Hb_012779_110--Hb_003023_050 Hb_006469_060 Hb_006469_060 Hb_012779_110--Hb_006469_060 Hb_005276_100 Hb_005276_100 Hb_012779_110--Hb_005276_100 Hb_000580_160--Hb_005276_100 Hb_000580_160--Hb_003023_050 Hb_000580_160--Hb_006469_060 Hb_004055_060 Hb_004055_060 Hb_000580_160--Hb_004055_060 Hb_002235_220 Hb_002235_220 Hb_000580_160--Hb_002235_220 Hb_000284_010 Hb_000284_010 Hb_002221_080--Hb_000284_010 Hb_002298_040 Hb_002298_040 Hb_002221_080--Hb_002298_040 Hb_005016_130 Hb_005016_130 Hb_002221_080--Hb_005016_130 Hb_000078_030 Hb_000078_030 Hb_002221_080--Hb_000078_030 Hb_115919_020 Hb_115919_020 Hb_002221_080--Hb_115919_020 Hb_000787_070 Hb_000787_070 Hb_002221_080--Hb_000787_070 Hb_001104_120 Hb_001104_120 Hb_000025_290--Hb_001104_120 Hb_007441_180 Hb_007441_180 Hb_000025_290--Hb_007441_180 Hb_001621_180 Hb_001621_180 Hb_000025_290--Hb_001621_180 Hb_000085_200 Hb_000085_200 Hb_000025_290--Hb_000085_200 Hb_011609_180 Hb_011609_180 Hb_000025_290--Hb_011609_180 Hb_003023_050--Hb_004055_060 Hb_001279_250 Hb_001279_250 Hb_003023_050--Hb_001279_250 Hb_000052_010 Hb_000052_010 Hb_003023_050--Hb_000052_010 Hb_028365_010 Hb_028365_010 Hb_003023_050--Hb_028365_010 Hb_001252_140 Hb_001252_140 Hb_006469_060--Hb_001252_140 Hb_007747_130 Hb_007747_130 Hb_006469_060--Hb_007747_130 Hb_005615_070 Hb_005615_070 Hb_006469_060--Hb_005615_070 Hb_006469_060--Hb_001621_180 Hb_000143_050 Hb_000143_050 Hb_005276_100--Hb_000143_050 Hb_000032_260 Hb_000032_260 Hb_005276_100--Hb_000032_260 Hb_000061_160 Hb_000061_160 Hb_005276_100--Hb_000061_160 Hb_005276_100--Hb_001621_180 Hb_000853_360 Hb_000853_360 Hb_005276_100--Hb_000853_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.1959 0.281865 0.755546 0.910179 18.0296 8.78143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.8901 34.5344 9.35465 0.938805 0

CAGE analysis