Hb_012787_030

Information

Type -
Description -
Location Contig12787: 10944-12853
Sequence    

Annotation

kegg
ID rcu:RCOM_0698930
description Curved DNA-binding protein, putative
nr
ID XP_012091968.1
description PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
swissprot
ID Q9D832
description DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2 SV=1
trembl
ID A0A067JMM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21716 PE=4 SV=1
Gene Ontology
ID GO:0005737
description dnaj heat shock family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08561: 11003-12848
cDNA
(Sanger)
(ID:Location)		 008_B13.ab1: 12384-12848 , 041_M11.ab1: 12198-12848

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012787_030 0.0 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
2 Hb_015026_020 0.1120583708 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
3 Hb_001894_160 0.1150410974 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000928_250 0.1150875355 - - calcium ion binding protein, putative [Ricinus communis]
5 Hb_003106_200 0.1154388421 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
6 Hb_003747_050 0.1207878587 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
7 Hb_011671_110 0.124264092 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
8 Hb_002249_170 0.1279883742 - - copine, putative [Ricinus communis]
9 Hb_000032_200 0.1303676422 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
10 Hb_000732_030 0.1317805552 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012753_210 0.1379038226 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
12 Hb_000008_390 0.1384739227 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
13 Hb_000803_090 0.139406637 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
14 Hb_006935_040 0.1400527032 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
15 Hb_005394_010 0.1404225274 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
16 Hb_001123_110 0.141007148 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001519_060 0.1435187268 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
18 Hb_000959_190 0.1439089547 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
19 Hb_005941_020 0.1440305783 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
20 Hb_000818_120 0.1454759603 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012787_030 Hb_012787_030 Hb_015026_020 Hb_015026_020 Hb_012787_030--Hb_015026_020 Hb_001894_160 Hb_001894_160 Hb_012787_030--Hb_001894_160 Hb_000928_250 Hb_000928_250 Hb_012787_030--Hb_000928_250 Hb_003106_200 Hb_003106_200 Hb_012787_030--Hb_003106_200 Hb_003747_050 Hb_003747_050 Hb_012787_030--Hb_003747_050 Hb_011671_110 Hb_011671_110 Hb_012787_030--Hb_011671_110 Hb_015026_020--Hb_000928_250 Hb_015026_020--Hb_001894_160 Hb_015026_020--Hb_011671_110 Hb_015026_020--Hb_003106_200 Hb_005941_020 Hb_005941_020 Hb_015026_020--Hb_005941_020 Hb_000076_100 Hb_000076_100 Hb_015026_020--Hb_000076_100 Hb_001894_160--Hb_011671_110 Hb_001894_160--Hb_005941_020 Hb_033930_010 Hb_033930_010 Hb_001894_160--Hb_033930_010 Hb_001894_160--Hb_000928_250 Hb_000622_210 Hb_000622_210 Hb_001894_160--Hb_000622_210 Hb_000928_250--Hb_003106_200 Hb_006935_040 Hb_006935_040 Hb_000928_250--Hb_006935_040 Hb_000928_250--Hb_011671_110 Hb_000928_250--Hb_000622_210 Hb_000818_120 Hb_000818_120 Hb_003106_200--Hb_000818_120 Hb_002249_170 Hb_002249_170 Hb_003106_200--Hb_002249_170 Hb_000032_200 Hb_000032_200 Hb_003106_200--Hb_000032_200 Hb_001198_080 Hb_001198_080 Hb_003106_200--Hb_001198_080 Hb_000803_090 Hb_000803_090 Hb_003747_050--Hb_000803_090 Hb_003747_050--Hb_011671_110 Hb_047442_010 Hb_047442_010 Hb_003747_050--Hb_047442_010 Hb_002600_130 Hb_002600_130 Hb_003747_050--Hb_002600_130 Hb_000317_190 Hb_000317_190 Hb_003747_050--Hb_000317_190 Hb_011671_110--Hb_005941_020 Hb_011671_110--Hb_033930_010 Hb_001776_200 Hb_001776_200 Hb_011671_110--Hb_001776_200 Hb_005394_010 Hb_005394_010 Hb_011671_110--Hb_005394_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1814 40.8137 84.5474 35.9212 6.21255 9.45654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.74228 4.9072 7.69558 6.36692 19.0507

CAGE analysis