Hb_012787_040

Information

Type -
Description -
Location Contig12787: 15886-20859
Sequence    

Annotation

kegg
ID tcc:TCM_010028
description Actin cross-linking protein, putative
nr
ID XP_012091970.1
description PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21718 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08562: 15954-20710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012787_040 0.0 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
2 Hb_003752_120 0.0722961362 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
3 Hb_000803_060 0.0745127846 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
4 Hb_001662_170 0.0806996974 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
5 Hb_011360_090 0.0818796471 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
6 Hb_158696_010 0.0980958908 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
7 Hb_004106_010 0.099031082 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
8 Hb_004032_310 0.1050164154 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
9 Hb_006414_020 0.1121276563 transcription factor TF Family: MYB -
10 Hb_007007_080 0.1136403912 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001053_200 0.1145680671 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
12 Hb_008103_100 0.1165411729 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
13 Hb_000805_040 0.1259816438 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
14 Hb_011689_100 0.1274599394 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
15 Hb_000087_100 0.1280929826 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
16 Hb_001489_120 0.1287083609 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
17 Hb_103788_010 0.1288343958 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
18 Hb_000172_080 0.1297809789 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
19 Hb_000071_140 0.1302379073 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
20 Hb_000221_060 0.1305796838 - - -

Gene co-expression network

sample Hb_012787_040 Hb_012787_040 Hb_003752_120 Hb_003752_120 Hb_012787_040--Hb_003752_120 Hb_000803_060 Hb_000803_060 Hb_012787_040--Hb_000803_060 Hb_001662_170 Hb_001662_170 Hb_012787_040--Hb_001662_170 Hb_011360_090 Hb_011360_090 Hb_012787_040--Hb_011360_090 Hb_158696_010 Hb_158696_010 Hb_012787_040--Hb_158696_010 Hb_004106_010 Hb_004106_010 Hb_012787_040--Hb_004106_010 Hb_004032_310 Hb_004032_310 Hb_003752_120--Hb_004032_310 Hb_003752_120--Hb_001662_170 Hb_002915_070 Hb_002915_070 Hb_003752_120--Hb_002915_070 Hb_000069_780 Hb_000069_780 Hb_003752_120--Hb_000069_780 Hb_103788_010 Hb_103788_010 Hb_003752_120--Hb_103788_010 Hb_006414_020 Hb_006414_020 Hb_000803_060--Hb_006414_020 Hb_001258_150 Hb_001258_150 Hb_000803_060--Hb_001258_150 Hb_001489_120 Hb_001489_120 Hb_000803_060--Hb_001489_120 Hb_000803_060--Hb_003752_120 Hb_000803_060--Hb_004032_310 Hb_001662_170--Hb_004106_010 Hb_001662_170--Hb_004032_310 Hb_001053_200 Hb_001053_200 Hb_001662_170--Hb_001053_200 Hb_001662_170--Hb_011360_090 Hb_000805_040 Hb_000805_040 Hb_011360_090--Hb_000805_040 Hb_009040_010 Hb_009040_010 Hb_011360_090--Hb_009040_010 Hb_011360_090--Hb_000803_060 Hb_011360_090--Hb_006414_020 Hb_158696_010--Hb_004106_010 Hb_158696_010--Hb_001662_170 Hb_158696_010--Hb_003752_120 Hb_093177_010 Hb_093177_010 Hb_158696_010--Hb_093177_010 Hb_004631_110 Hb_004631_110 Hb_158696_010--Hb_004631_110 Hb_004106_010--Hb_093177_010 Hb_004106_010--Hb_001053_200 Hb_008103_100 Hb_008103_100 Hb_004106_010--Hb_008103_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.39319 97.1397 26.5613 32.7919 6.07398 7.27497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.73352 4.06066 5.87587 13.8659 13.5599

CAGE analysis