Hb_012787_050

Information

Type -
Description -
Location Contig12787: 28581-29588
Sequence    

Annotation

kegg
ID pxb:103950892
description glutathione S-transferase U17-like
nr
ID XP_012091975.1
description PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
swissprot
ID Q9FUS8
description Glutathione S-transferase U17 OS=Arabidopsis thaliana GN=GSTU17 PE=2 SV=1
trembl
ID A0A067JMM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21721 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08566: 28655-30539
cDNA
(Sanger)
(ID:Location)		 004_M17.ab1: 28785-29680

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012787_050 0.0 - - PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
2 Hb_006846_030 0.0697162518 - - respiratory burst oxidase A [Manihot esculenta]
3 Hb_000070_070 0.0735852658 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
4 Hb_023956_010 0.0789094052 - - glutathione s-transferase, putative [Ricinus communis]
5 Hb_002333_010 0.0802449407 - - hypothetical protein JCGZ_18834 [Jatropha curcas]
6 Hb_003847_050 0.0885245819 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
7 Hb_008727_040 0.0905573861 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001568_010 0.0920193832 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000963_010 0.1035911589 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
10 Hb_029866_080 0.113608445 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
11 Hb_002236_010 0.1158860516 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
12 Hb_085315_010 0.1159032291 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
13 Hb_150084_010 0.1161154779 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
14 Hb_005489_120 0.1164353069 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
15 Hb_003964_060 0.1211888917 - - PREDICTED: beta-glucosidase 40 [Jatropha curcas]
16 Hb_019026_050 0.1212344379 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005333_120 0.1219853068 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
18 Hb_002553_070 0.1225118858 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
19 Hb_002042_160 0.1253871084 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
20 Hb_001564_090 0.1278489545 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012787_050 Hb_012787_050 Hb_006846_030 Hb_006846_030 Hb_012787_050--Hb_006846_030 Hb_000070_070 Hb_000070_070 Hb_012787_050--Hb_000070_070 Hb_023956_010 Hb_023956_010 Hb_012787_050--Hb_023956_010 Hb_002333_010 Hb_002333_010 Hb_012787_050--Hb_002333_010 Hb_003847_050 Hb_003847_050 Hb_012787_050--Hb_003847_050 Hb_008727_040 Hb_008727_040 Hb_012787_050--Hb_008727_040 Hb_006846_030--Hb_003847_050 Hb_006846_030--Hb_023956_010 Hb_001568_010 Hb_001568_010 Hb_006846_030--Hb_001568_010 Hb_002448_020 Hb_002448_020 Hb_006846_030--Hb_002448_020 Hb_019026_050 Hb_019026_050 Hb_006846_030--Hb_019026_050 Hb_002236_010 Hb_002236_010 Hb_000070_070--Hb_002236_010 Hb_000070_070--Hb_023956_010 Hb_010417_090 Hb_010417_090 Hb_000070_070--Hb_010417_090 Hb_003964_060 Hb_003964_060 Hb_000070_070--Hb_003964_060 Hb_002553_070 Hb_002553_070 Hb_000070_070--Hb_002553_070 Hb_023956_010--Hb_003847_050 Hb_023956_010--Hb_002553_070 Hb_023956_010--Hb_002236_010 Hb_023956_010--Hb_019026_050 Hb_150084_010 Hb_150084_010 Hb_002333_010--Hb_150084_010 Hb_000963_010 Hb_000963_010 Hb_002333_010--Hb_000963_010 Hb_002333_010--Hb_001568_010 Hb_000318_060 Hb_000318_060 Hb_002333_010--Hb_000318_060 Hb_005333_120 Hb_005333_120 Hb_002333_010--Hb_005333_120 Hb_003847_050--Hb_001568_010 Hb_003847_050--Hb_019026_050 Hb_003847_050--Hb_002448_020 Hb_004282_010 Hb_004282_010 Hb_008727_040--Hb_004282_010 Hb_008727_040--Hb_001568_010 Hb_085315_010 Hb_085315_010 Hb_008727_040--Hb_085315_010 Hb_000956_070 Hb_000956_070 Hb_008727_040--Hb_000956_070 Hb_008727_040--Hb_006846_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 54.3873 34.4856 163.892 0 0.168468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.324514 0.0510349 0 149.387 38.6312

CAGE analysis