Hb_012787_060

Information

Type -
Description -
Location Contig12787: 32514-34127
Sequence    

Annotation

kegg
ID pmum:103321708
description glutathione S-transferase U17-like
nr
ID XP_008221755.1
description PREDICTED: glutathione S-transferase U17-like [Prunus mume]
swissprot
ID -
description -
trembl
ID A0A0B2PVV3
description Putative glutathione S-transferase GSTU6 OS=Glycine soja GN=glysoja_029572 PE=4 SV=1
Gene Ontology
ID GO:0004462
description glutathione s-transferase u17-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012787_060 0.0 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
2 Hb_001048_070 0.0764503305 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
3 Hb_002888_100 0.0874711983 - - PREDICTED: uncharacterized protein LOC103699074, partial [Phoenix dactylifera]
4 Hb_002641_140 0.0888208375 - - protein phosphatase 2c, putative [Ricinus communis]
5 Hb_000098_260 0.0913129375 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
6 Hb_007479_080 0.1006328047 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
7 Hb_004634_030 0.1012746074 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008725_020 0.1016595898 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
9 Hb_000342_020 0.1028839873 - - bel1 homeotic protein, putative [Ricinus communis]
10 Hb_003849_200 0.1047019857 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
11 Hb_000571_060 0.1071781583 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
12 Hb_001141_160 0.107551344 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
13 Hb_002902_040 0.1096699975 - - PREDICTED: peroxidase 51 [Jatropha curcas]
14 Hb_000163_180 0.109688887 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
15 Hb_142026_010 0.1125909401 - - PREDICTED: probable mannitol dehydrogenase [Jatropha curcas]
16 Hb_001269_400 0.1145257973 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
17 Hb_002151_020 0.1149087817 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
18 Hb_002450_180 0.1152099594 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002811_110 0.1152714642 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
20 Hb_008021_040 0.1157373701 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]

Gene co-expression network

sample Hb_012787_060 Hb_012787_060 Hb_001048_070 Hb_001048_070 Hb_012787_060--Hb_001048_070 Hb_002888_100 Hb_002888_100 Hb_012787_060--Hb_002888_100 Hb_002641_140 Hb_002641_140 Hb_012787_060--Hb_002641_140 Hb_000098_260 Hb_000098_260 Hb_012787_060--Hb_000098_260 Hb_007479_080 Hb_007479_080 Hb_012787_060--Hb_007479_080 Hb_004634_030 Hb_004634_030 Hb_012787_060--Hb_004634_030 Hb_003849_200 Hb_003849_200 Hb_001048_070--Hb_003849_200 Hb_008021_040 Hb_008021_040 Hb_001048_070--Hb_008021_040 Hb_001048_070--Hb_002888_100 Hb_001048_070--Hb_002641_140 Hb_000342_020 Hb_000342_020 Hb_001048_070--Hb_000342_020 Hb_001562_030 Hb_001562_030 Hb_002888_100--Hb_001562_030 Hb_002888_100--Hb_000098_260 Hb_008725_020 Hb_008725_020 Hb_002888_100--Hb_008725_020 Hb_002888_100--Hb_004634_030 Hb_002641_140--Hb_008021_040 Hb_000411_020 Hb_000411_020 Hb_002641_140--Hb_000411_020 Hb_189208_050 Hb_189208_050 Hb_002641_140--Hb_189208_050 Hb_002641_140--Hb_000098_260 Hb_005357_120 Hb_005357_120 Hb_002641_140--Hb_005357_120 Hb_092975_010 Hb_092975_010 Hb_000098_260--Hb_092975_010 Hb_000365_430 Hb_000365_430 Hb_000098_260--Hb_000365_430 Hb_000098_260--Hb_000411_020 Hb_000742_130 Hb_000742_130 Hb_000098_260--Hb_000742_130 Hb_000645_160 Hb_000645_160 Hb_000098_260--Hb_000645_160 Hb_007479_080--Hb_000342_020 Hb_001269_400 Hb_001269_400 Hb_007479_080--Hb_001269_400 Hb_002151_020 Hb_002151_020 Hb_007479_080--Hb_002151_020 Hb_003411_020 Hb_003411_020 Hb_007479_080--Hb_003411_020 Hb_007479_080--Hb_001048_070 Hb_002205_150 Hb_002205_150 Hb_004634_030--Hb_002205_150 Hb_142026_010 Hb_142026_010 Hb_004634_030--Hb_142026_010 Hb_012539_100 Hb_012539_100 Hb_004634_030--Hb_012539_100 Hb_004634_030--Hb_008725_020 Hb_004634_030--Hb_000098_260 Hb_002902_040 Hb_002902_040 Hb_004634_030--Hb_002902_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.057815 84.3067 80.5448 150.478 0.0911048 0.119372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.744923 0.0976754 0 64.3939 51.6589

CAGE analysis